RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TFCP2Q12800 502 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 TREML2Q5T2D2 321 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 TBC1D9Q6ZT07 1266 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 PRRT2Q7Z6L0 340 aaPredicted RBP10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 DZIP1Q86YF9 867 aaKnown RBP10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 U2AF1L4Q8WU68 220 aaKnown RBP10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 PICK1Q9NRD5 415 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 GNL3LQ9NVN8 582 aaKnown RBP10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 DENND2AQ9ULE3 1009 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 AFG3L2Q9Y4W6 797 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 CXCL11O14625 94 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 ADCY3O60266 1144 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 CIAO1O76071 339 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 INHAP05111 366 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 HOXD10P28358 340 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 IL15P40933 162 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 PRMT2P55345 433 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 RRP1BQ14684 758 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 ANKRD13CQ8N6S4 541 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 MAFAQ8NHW3 353 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 XAGE2Q96GT9 111 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 GAKO14976 1311 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 SALL1Q9NSC2 1324 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 ALPK3Q96L96 1907 aa10.74□□□□□ -0.69
SHKBP1-220ENST00000599716 A0A1B0GUL7 405 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 POTEB2H3BUK9 544 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 TNPO2O14787 897 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 RHBDL3P58872 404 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 MECOMQ03112 1051 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 TRIM32Q13049 653 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 SHROOM1Q2M3G4 852 aaPredicted RBP10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 TJAP1Q5JTD0 557 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 DIS3LQ8TF46 1054 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 NEUROD6Q96NK8 337 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 DEFB118Q96PH6 123 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 IDI2Q9BXS1 227 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 MROH7-TTC4A0A0A0MT08 1334 aa10.73□□□□□ -0.69
SHKBP1-220ENST00000599716 ATAD5Q96QE3 1844 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 ENTPD3O75355 529 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 UBXN2AP68543 259 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 ALDH1L2Q3SY69 923 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 FASTKD5Q7L8L6 764 aaKnown RBP10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 SLAIN1Q8ND83 568 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 COPRSQ9NQ92 184 aa10.72□□□□□ -0.69
SHKBP1-220ENST00000599716 SEMA3EO15041 775 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 SRGAP3O43295 1099 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 SGPL1O95470 568 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 TFRCP02786 760 aaKnown RBP10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 HMGCS2P54868 508 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 SPP2Q13103 211 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 SNRKQ9NRH2 765 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 HMG20BQ9P0W2 317 aa10.71□□□□□ -0.69
SHKBP1-220ENST00000599716 SIPA1L1O43166 1804 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 CTNND1O60716 968 aaKnown RBP10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 CAPN2P17655 700 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 JAG1P78504 1218 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 MAP3K10Q02779 954 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 ERICH6Q7L0X2 663 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 TRMT2AQ8IZ69 625 aaKnown RBP10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 PAWRQ96IZ0 340 aaKnown RBP10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 AGTPBP1Q9UPW5 1226 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 MYO5AQ9Y4I1 1855 aaKnown RBP10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 LOC285556D6RIA3 1793 aa10.7□□□□□ -0.7
SHKBP1-220ENST00000599716 GPR75-ASB3A0A0A6YYF3 556 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 PNMA6EA0A0J9YXQ4 647 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 MCAMP43121 646 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 MAGEA10P43363 369 aaPredicted RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 ZGPATQ8N5A5 531 aaKnown RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 SH3RF3Q8TEJ3 882 aaPredicted RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 NSUN4Q96CB9 384 aaKnown RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 FAM161BQ96MY7 647 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 API5Q9BZZ5 524 aaKnown RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 UBE2OQ9C0C9 1292 aaKnown RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 RAI14Q9P0K7 980 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 ZMYND8Q9ULU4 1186 aaPredicted RBP10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 PLXNB2O15031 1838 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 CACNA1GO43497 2377 aa10.69□□□□□ -0.7
SHKBP1-220ENST00000599716 SYN1P17600 705 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 RARSP54136 660 aaKnown RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 MVPQ14764 893 aaKnown RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 GORABQ5T7V8 394 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 ZNF697Q5TEC3 545 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 MAPKAPK5Q8IW41 473 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 TEX11Q8IYF3 940 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 C7orf61Q8IZ16 206 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 SPATA5Q8NB90 893 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 CLUAP1Q96AJ1 413 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 FAM163AQ96GL9 167 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 CDX2Q99626 313 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 OSBPL5Q9H0X9 879 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 ASCC2Q9H1I8 757 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 PAK6Q9NQU5 681 aaPredicted RBP10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 HCN4Q9Y3Q4 1203 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 XIRP2A4UGR9 3374 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 ZDBF2Q9HCK1 2354 aa10.68□□□□□ -0.7
SHKBP1-220ENST00000599716 BCAR3O75815 825 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms