RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 PTPRAP18433 802 aa27.41■■□□□ 1.98
CCDC9-204ENST00000599398 SAP30BPQ9UHR5 308 aaKnown RBP27.41■■□□□ 1.98
CCDC9-204ENST00000599398 HERC5Q9UII4 1024 aaKnown RBP27.41■■□□□ 1.98
CCDC9-204ENST00000599398 PALD1Q9ULE6 856 aa27.41■■□□□ 1.98
CCDC9-204ENST00000599398 KCNH4Q9UQ05 1017 aa27.41■■□□□ 1.98
CCDC9-204ENST00000599398 HAUS7Q99871 368 aa27.4■■□□□ 1.98
CCDC9-204ENST00000599398 TRIM34Q9BYJ4 488 aa27.4■■□□□ 1.98
CCDC9-204ENST00000599398 MYH1P12882 1939 aa27.39■■□□□ 1.98
CCDC9-204ENST00000599398 MAGEB6P1A0A0J9YX57 407 aa27.39■■□□□ 1.98
CCDC9-204ENST00000599398 SLC4A8Q2Y0W8 1093 aa27.39■■□□□ 1.98
CCDC9-204ENST00000599398 CRACR2BQ8N4Y2 399 aaPredicted RBP27.39■■□□□ 1.98
CCDC9-204ENST00000599398 ZNF532Q9HCE3 1301 aa27.39■■□□□ 1.97
CCDC9-204ENST00000599398 HLA-DOAP06340 250 aa27.38■■□□□ 1.97
CCDC9-204ENST00000599398 GPATCH3Q96I76 525 aa27.38■■□□□ 1.97
CCDC9-204ENST00000599398 ZCCHC17Q9NP64 241 aaKnown RBP27.38■■□□□ 1.97
CCDC9-204ENST00000599398 ECHDC1Q9NTX5 307 aa27.38■■□□□ 1.97
CCDC9-204ENST00000599398 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.38■■□□□ 1.97
CCDC9-204ENST00000599398 SIPA1L1O43166 1804 aa27.38■■□□□ 1.97
CCDC9-204ENST00000599398 ATAD5Q96QE3 1844 aa27.37■■□□□ 1.97
CCDC9-204ENST00000599398 CXCL11O14625 94 aa27.37■■□□□ 1.97
CCDC9-204ENST00000599398 SP3Q02447 781 aa27.36■■□□□ 1.97
CCDC9-204ENST00000599398 PKN2Q16513 984 aaKnown RBP27.36■■□□□ 1.97
CCDC9-204ENST00000599398 ANKRD23Q86SG2 305 aa27.36■■□□□ 1.97
CCDC9-204ENST00000599398 CCDC84Q86UT8 332 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-204ENST00000599398 FOXP4Q8IVH2 680 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-204ENST00000599398 ERO1AQ96HE7 468 aa27.36■■□□□ 1.97
CCDC9-204ENST00000599398 RIOK1Q9BRS2 568 aaKnown RBP27.36■■□□□ 1.97
CCDC9-204ENST00000599398 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.36■■□□□ 1.97
CCDC9-204ENST00000599398 AFG3L2Q9Y4W6 797 aa27.36■■□□□ 1.97
CCDC9-204ENST00000599398 PHIPQ8WWQ0 1821 aa27.35■■□□□ 1.97
CCDC9-204ENST00000599398 CAP2P40123 477 aa27.35■■□□□ 1.97
CCDC9-204ENST00000599398 CD99L2Q8TCZ2 262 aa27.35■■□□□ 1.97
CCDC9-204ENST00000599398 MYH7P12883 1935 aa27.34■■□□□ 1.97
CCDC9-204ENST00000599398 TCRBV5S4A2TA0A5A2 114 aa27.34■■□□□ 1.97
CCDC9-204ENST00000599398 TRIM75PA6NK02 468 aa27.34■■□□□ 1.97
CCDC9-204ENST00000599398 PDHXO00330 501 aa27.34■■□□□ 1.97
CCDC9-204ENST00000599398 CRNKL1Q9BZJ0 848 aaKnown RBP27.34■■□□□ 1.97
CCDC9-204ENST00000599398 TRIM17Q9Y577 477 aa27.34■■□□□ 1.97
CCDC9-204ENST00000599398 A0A0G2JLL6 359 aaPredicted RBP27.33■■□□□ 1.97
CCDC9-204ENST00000599398 ADD2P35612 726 aa27.33■■□□□ 1.97
CCDC9-204ENST00000599398 MOGSQ13724 837 aa27.33■■□□□ 1.97
CCDC9-204ENST00000599398 RRP1BQ14684 758 aaKnown RBP27.33■■□□□ 1.97
CCDC9-204ENST00000599398 TSHZ3Q63HK5 1081 aa27.33■■□□□ 1.97
CCDC9-204ENST00000599398 GADL1Q6ZQY3 521 aa27.33■■□□□ 1.97
CCDC9-204ENST00000599398 FASTKD5Q7L8L6 764 aaKnown RBP27.33■■□□□ 1.97
CCDC9-204ENST00000599398 PRRT2Q7Z6L0 340 aaPredicted RBP27.33■■□□□ 1.97
CCDC9-204ENST00000599398 PTPRFP10586 1907 aa27.33■■□□□ 1.97
CCDC9-204ENST00000599398 TLR2O60603 784 aa27.32■■□□□ 1.96
CCDC9-204ENST00000599398 SLFNL1Q499Z3 407 aa27.32■■□□□ 1.96
CCDC9-204ENST00000599398 DNAJC18Q9H819 358 aa27.32■■□□□ 1.96
CCDC9-204ENST00000599398 ZBTB47Q9UFB7 747 aaPredicted RBP27.32■■□□□ 1.96
CCDC9-204ENST00000599398 METTL16Q86W50 562 aaKnown RBP27.31■■□□□ 1.96
CCDC9-204ENST00000599398 LCORLQ8N3X6 602 aa27.31■■□□□ 1.96
CCDC9-204ENST00000599398 NAV1Q8NEY1 1877 aa27.31■■□□□ 1.96
CCDC9-204ENST00000599398 ZSCAN25Q6NSZ9 544 aa27.3■■□□□ 1.96
CCDC9-204ENST00000599398 FBXO46Q6PJ61 603 aaPredicted RBP27.3■■□□□ 1.96
CCDC9-204ENST00000599398 OTOP1Q7RTM1 612 aa27.3■■□□□ 1.96
CCDC9-204ENST00000599398 TTC6Q86TZ1 520 aa27.3■■□□□ 1.96
CCDC9-204ENST00000599398 ARMT1Q9H993 441 aa27.3■■□□□ 1.96
CCDC9-204ENST00000599398 USP17L5A8MUK1 530 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 GDF11O95390 407 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 POLR3DP05423 398 aaPredicted RBP27.29■■□□□ 1.96
CCDC9-204ENST00000599398 SPP2Q13103 211 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 GPAT2Q6NUI2 795 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 EFCC1Q9HA90 598 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 HPS5Q9UPZ3 1129 aa27.29■■□□□ 1.96
CCDC9-204ENST00000599398 MBD4O95243 580 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 ASNSP08243 561 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 ZNF280CQ8ND82 737 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 SDR42E1Q8WUS8 393 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 PARK7Q99497 189 aaKnown RBP27.28■■□□□ 1.96
CCDC9-204ENST00000599398 TBC1D2Q9BYX2 928 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 AS3MTQ9HBK9 375 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 CPA4Q9UI42 421 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 SERPINB13Q9UIV8 391 aa27.28■■□□□ 1.96
CCDC9-204ENST00000599398 CHGBP05060 677 aa27.27■■□□□ 1.96
CCDC9-204ENST00000599398 UBE3CQ15386 1083 aa27.27■■□□□ 1.96
CCDC9-204ENST00000599398 MCM9Q9NXL9 1143 aa27.27■■□□□ 1.96
CCDC9-204ENST00000599398 CYP2C8P10632 490 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 HDAC1Q13547 482 aaPredicted RBP27.26■■□□□ 1.95
CCDC9-204ENST00000599398 AAMPQ13685 434 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 KIF22Q14807 665 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 ARHGEF6Q15052 776 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 ANKRD45Q5TZF3 282 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 OTUD7AQ8TE49 926 aaPredicted RBP27.26■■□□□ 1.95
CCDC9-204ENST00000599398 EHD4Q9H223 541 aa27.26■■□□□ 1.95
CCDC9-204ENST00000599398 DDX60LQ5H9U9 1706 aaKnown RBP27.25■■□□□ 1.95
CCDC9-204ENST00000599398 TTC41PQ6P2S7 1318 aa27.25■■□□□ 1.95
CCDC9-204ENST00000599398 ERC2O15083 957 aa27.25■■□□□ 1.95
CCDC9-204ENST00000599398 PLCD1P51178 756 aa27.25■■□□□ 1.95
CCDC9-204ENST00000599398 JAG1P78504 1218 aa27.25■■□□□ 1.95
CCDC9-204ENST00000599398 SHROOM1Q2M3G4 852 aaPredicted RBP27.25■■□□□ 1.95
CCDC9-204ENST00000599398 GCC1Q96CN9 775 aa27.25■■□□□ 1.95
CCDC9-204ENST00000599398 DCP1AQ9NPI6 582 aaPredicted RBP27.25■■□□□ 1.95
CCDC9-204ENST00000599398 PRKAB2O43741 272 aa27.24■■□□□ 1.95
CCDC9-204ENST00000599398 ECM2O94769 699 aaPredicted RBP27.24■■□□□ 1.95
CCDC9-204ENST00000599398 HMGCS2P54868 508 aa27.24■■□□□ 1.95
CCDC9-204ENST00000599398 CAP1Q01518 475 aa27.24■■□□□ 1.95
CCDC9-204ENST00000599398 C17orf99Q6UX52 265 aa27.24■■□□□ 1.95
CCDC9-204ENST00000599398 KBTBD3Q8NAB2 608 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms