RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TRIM34Q9BYJ4 488 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 TBC1D2Q9BYX2 928 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 CCDC8Q9H0W5 538 aaPredicted RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 DHX36Q9H2U1 1008 aaKnown RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 TLR7Q9NYK1 1049 aaKnown RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 SRRDQ9UH36 339 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 HERC5Q9UII4 1024 aaKnown RBP11.98□□□□□ -0.49
VRK3-216ENST00000599342 SLC45A1Q9Y2W3 748 aa11.98□□□□□ -0.49
VRK3-216ENST00000599342 TNRC18O15417 2968 aaPredicted RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 IDH1O75874 414 aaKnown RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 BCRP11274 1271 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 EN2P19622 333 aaPredicted RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 OSBPP22059 807 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 HSP90AB4PQ58FF6 505 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 CCDC84Q86UT8 332 aaPredicted RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 TGFBRAP1Q8WUH2 860 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 EAF2Q96CJ1 260 aaPredicted RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 AS3MTQ9HBK9 375 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.97□□□□□ -0.49
VRK3-216ENST00000599342 PI4KBQ9UBF8 816 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 PNMA3Q9UL41 463 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 AGTPBP1Q9UPW5 1226 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 CENPFP49454 3210 aa11.97□□□□□ -0.49
VRK3-216ENST00000599342 FLT1P17948 1338 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 SLC34A2O95436 690 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 CYP7A1P22680 504 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 CTGFP29279 349 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 CAP2P40123 477 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 PPP4CP60510 307 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 SPP2Q13103 211 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 ADGRA1Q86SQ6 560 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 AACSQ86V21 672 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 CERS3Q8IU89 383 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 MAPKAPK5Q8IW41 473 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 CRACR2BQ8N4Y2 399 aaPredicted RBP11.96□□□□□ -0.49
VRK3-216ENST00000599342 PROCA1Q8NCQ7 364 aaPredicted RBP11.96□□□□□ -0.49
VRK3-216ENST00000599342 ZNF280CQ8ND82 737 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 PIH1D3Q9NQM4 214 aaKnown RBP11.96□□□□□ -0.49
VRK3-216ENST00000599342 EXOC6BQ9Y2D4 811 aa11.96□□□□□ -0.49
VRK3-216ENST00000599342 USP17L5A8MUK1 530 aa11.95□□□□□ -0.5
VRK3-216ENST00000599342 HMMRO75330 724 aa11.95□□□□□ -0.5
VRK3-216ENST00000599342 HLA-DOAP06340 250 aa11.95□□□□□ -0.5
VRK3-216ENST00000599342 GRK4P32298 578 aa11.95□□□□□ -0.5
VRK3-216ENST00000599342 PABPC4Q13310 644 aaKnown RBP eCLIP11.95□□□□□ -0.5
VRK3-216ENST00000599342 BIN2Q9UBW5 565 aaPredicted RBP11.95□□□□□ -0.5
VRK3-216ENST00000599342 TNPO2O14787 897 aaKnown RBP11.94□□□□□ -0.5
VRK3-216ENST00000599342 ASNSP08243 561 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 USP5P45974 858 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 HMGCS2P54868 508 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 UBXN2AP68543 259 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 PRKCZQ05513 592 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 MAP3K12Q12852 859 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 TREML2Q5T2D2 321 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 FOXP4Q8IVH2 680 aaPredicted RBP11.94□□□□□ -0.5
VRK3-216ENST00000599342 ANKRD13CQ8N6S4 541 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 MAGEB6Q8N7X4 407 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 CHMP4BQ9H444 224 aaKnown RBP11.94□□□□□ -0.5
VRK3-216ENST00000599342 IL1RAPL2Q9NP60 686 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 PALD1Q9ULE6 856 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 DDX19BQ9UMR2 479 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 PHIPQ8WWQ0 1821 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 PTPRFP10586 1907 aa11.94□□□□□ -0.5
VRK3-216ENST00000599342 BRCA2P51587 3418 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 ATAD5Q96QE3 1844 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 DYNLL1P63167 89 aaKnown RBP11.93□□□□□ -0.5
VRK3-216ENST00000599342 FAM110CQ1W6H9 321 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 TMED8Q6PL24 325 aaPredicted RBP11.93□□□□□ -0.5
VRK3-216ENST00000599342 RPAP2Q8IXW5 612 aaPredicted RBP11.93□□□□□ -0.5
VRK3-216ENST00000599342 CLASRPQ8N2M8 674 aaKnown RBP11.93□□□□□ -0.5
VRK3-216ENST00000599342 MIGA1Q8NAN2 632 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 SLAIN1Q8ND83 568 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 NKX2-3Q8TAU0 364 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 RHPN1Q8TCX5 695 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 GCC1Q96CN9 775 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 KIF1BPQ96EK5 621 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 TMOD4Q9NZQ9 345 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 SAP30BPQ9UHR5 308 aaKnown RBP11.93□□□□□ -0.5
VRK3-216ENST00000599342 COG6Q9Y2V7 657 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 NDUFB9Q9Y6M9 179 aa11.93□□□□□ -0.5
VRK3-216ENST00000599342 APBB1O00213 710 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 IFIT2P09913 472 aaKnown RBP11.92□□□□□ -0.5
VRK3-216ENST00000599342 GCLCP48506 637 aaPredicted RBP11.92□□□□□ -0.5
VRK3-216ENST00000599342 MTMR2Q13614 643 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 RRP1BQ14684 758 aaKnown RBP11.92□□□□□ -0.5
VRK3-216ENST00000599342 TTF1Q15361 905 aaPredicted RBP11.92□□□□□ -0.5
VRK3-216ENST00000599342 MTFR1Q15390 333 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 SH3D19Q5HYK7 790 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 COA7Q96BR5 231 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 BCL11AQ9H165 835 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 ANTXR1Q9H6X2 564 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 DNAJC18Q9H819 358 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 GINM1Q9NU53 330 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 GABRQQ9UN88 632 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 LOC285556D6RIA3 1793 aa11.92□□□□□ -0.5
VRK3-216ENST00000599342 MKI67P46013 3256 aaKnown RBP11.91□□□□□ -0.5
VRK3-216ENST00000599342 SIPA1L1O43166 1804 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 FOCADQ5VW36 1801 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 PDE4DIPQ5VU43 2346 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 ADCY3O60266 1144 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 GDF11O95390 407 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms