RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CRNKL1Q9BZJ0 848 aaKnown RBP16.74■□□□□ 0.27
UPF1-205ENST00000598209 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.74■□□□□ 0.27
UPF1-205ENST00000598209 PRDM10Q9NQV6 1147 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 PI4KBQ9UBF8 816 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 PALD1Q9ULE6 856 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 PHIPQ8WWQ0 1821 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 MBD4O95243 580 aa16.73■□□□□ 0.27
UPF1-205ENST00000598209 ARMT1Q9H993 441 aa16.73■□□□□ 0.27
UPF1-205ENST00000598209 STAP2Q9UGK3 403 aa16.73■□□□□ 0.27
UPF1-205ENST00000598209 HERC5Q9UII4 1024 aaKnown RBP16.73■□□□□ 0.27
UPF1-205ENST00000598209 CTNND1O60716 968 aaKnown RBP16.72■□□□□ 0.27
UPF1-205ENST00000598209 HLA-DOAP06340 250 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 GTF2A2P52657 109 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 PDE1AP54750 535 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 NUCB1Q02818 461 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 PPATQ06203 517 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 PPIL2Q13356 520 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 SLC4A8Q2Y0W8 1093 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 COL13A1Q5TAT6 717 aaPredicted RBP16.72■□□□□ 0.27
UPF1-205ENST00000598209 CHD1LQ86WJ1 897 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 IFNL1Q8IU54 200 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 SCYL3Q8IZE3 742 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 MS4A4AQ96JQ5 239 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 PTPRFP10586 1907 aa16.72■□□□□ 0.27
UPF1-205ENST00000598209 TESPA1A2RU30 521 aaPredicted RBP16.71■□□□□ 0.27
UPF1-205ENST00000598209 IRF6O14896 467 aa16.71■□□□□ 0.27
UPF1-205ENST00000598209 FOXP4Q8IVH2 680 aaPredicted RBP16.71■□□□□ 0.27
UPF1-205ENST00000598209 CRACR2BQ8N4Y2 399 aaPredicted RBP16.71■□□□□ 0.27
UPF1-205ENST00000598209 PICK1Q9NRD5 415 aa16.71■□□□□ 0.27
UPF1-205ENST00000598209 CCL15-CCL14A0A0B4J2E2 113 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 IGF2BP3O00425 579 aaKnown RBP eCLIP16.7■□□□□ 0.26
UPF1-205ENST00000598209 RNF113AO15541 343 aaKnown RBP16.7■□□□□ 0.26
UPF1-205ENST00000598209 CCL15Q16663 113 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 METTL16Q86W50 562 aaKnown RBP16.7■□□□□ 0.26
UPF1-205ENST00000598209 SDR42E1Q8WUS8 393 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 BRI3BPQ8WY22 251 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 TRIM34Q9BYJ4 488 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 PUS7LQ9H0K6 701 aaKnown RBP16.7■□□□□ 0.26
UPF1-205ENST00000598209 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 MYH8P13535 1937 aa16.7■□□□□ 0.26
UPF1-205ENST00000598209 PRKAB2O43741 272 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 ALDH1A1P00352 501 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
UPF1-205ENST00000598209 PTPRAP18433 802 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 SNAPC2Q13487 334 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 RRP1BQ14684 758 aaKnown RBP16.69■□□□□ 0.26
UPF1-205ENST00000598209 LRRFIP1Q32MZ4 808 aaKnown RBP16.69■□□□□ 0.26
UPF1-205ENST00000598209 OTUD7BQ6GQQ9 843 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 TTC6Q86TZ1 520 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 APPBP2Q92624 585 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 PTPN18Q99952 460 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 FSD1Q9BTV5 496 aa16.69■□□□□ 0.26
UPF1-205ENST00000598209 DCP1AQ9NPI6 582 aaPredicted RBP16.69■□□□□ 0.26
UPF1-205ENST00000598209 TBC1D8O95759 1140 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 POLR3DP05423 398 aaPredicted RBP16.68■□□□□ 0.26
UPF1-205ENST00000598209 CETPP11597 493 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 CAP2P40123 477 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 OSBP2Q969R2 916 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 MCM9Q9NXL9 1143 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.68■□□□□ 0.26
UPF1-205ENST00000598209 KCNH4Q9UQ05 1017 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 ZHX2Q9Y6X8 837 aa16.68■□□□□ 0.26
UPF1-205ENST00000598209 PLEKHM2Q8IWE5 1019 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 EVI5LQ96CN4 794 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 CFHR5Q9BXR6 569 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 EHD4Q9H223 541 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 ATP8A2Q9NTI2 1148 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 SERPINB13Q9UIV8 391 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 SLC4A4Q9Y6R1 1079 aa16.67■□□□□ 0.26
UPF1-205ENST00000598209 PLCD1P51178 756 aa16.66■□□□□ 0.26
UPF1-205ENST00000598209 CCDC84Q86UT8 332 aaPredicted RBP16.66■□□□□ 0.26
UPF1-205ENST00000598209 STRBPQ96SI9 672 aaKnown RBP16.66■□□□□ 0.26
UPF1-205ENST00000598209 R3HDMLQ9H3Y0 253 aa16.66■□□□□ 0.26
UPF1-205ENST00000598209 AFG3L2Q9Y4W6 797 aa16.66■□□□□ 0.26
UPF1-205ENST00000598209 M0R2C6 588 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 CXCL11O14625 94 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 CYP2D6P10635 497 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 EVX2Q03828 476 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 FAM43AQ8N2R8 423 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 DDRGK1Q96HY6 314 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 OSBPL3Q9H4L5 887 aa16.65■□□□□ 0.26
UPF1-205ENST00000598209 BTBD19C9JJ37 291 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 GPAA1O43292 621 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 GDF11O95390 407 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 ASNSP08243 561 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 JAG1P78504 1218 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 CRHR2Q13324 411 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 ZMYM1Q5SVZ6 1142 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 TATDN1Q6P1N9 297 aa16.64■□□□□ 0.25
UPF1-205ENST00000598209 SEC62Q99442 399 aaKnown RBP16.64■□□□□ 0.25
UPF1-205ENST00000598209 A0A0G2JLL6 359 aaPredicted RBP16.63■□□□□ 0.25
UPF1-205ENST00000598209 TRIM75PA6NK02 468 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 USP17L5A8MUK1 530 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 TRIM6-TRIM34B2RNG4 842 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 GPR25O00155 361 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 GABPAQ06546 454 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 MOGSQ13724 837 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 TAF1CQ15572 869 aaPredicted RBP16.63■□□□□ 0.25
UPF1-205ENST00000598209 SHROOM1Q2M3G4 852 aaPredicted RBP16.63■□□□□ 0.25
UPF1-205ENST00000598209 NOM1Q5C9Z4 860 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms