RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.38■□□□□ 0.85
SHKBP1-215ENST00000597649 GJD2Q9UKL4 321 aa20.38■□□□□ 0.85
SHKBP1-215ENST00000597649 CUL9Q8IWT3 2517 aa20.38■□□□□ 0.85
SHKBP1-215ENST00000597649 A0A1B0GUL7 405 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 NPM3O75607 178 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 FAM110CQ1W6H9 321 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 PI16Q6UXB8 463 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 TBC1D9Q6ZT07 1266 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 ERICH6Q7L0X2 663 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 LRCH3Q96II8 777 aa20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 YTHDC1Q96MU7 727 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-215ENST00000597649 TRIM32Q13049 653 aa20.36■□□□□ 0.85
SHKBP1-215ENST00000597649 PROCA1Q8NCQ7 364 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-215ENST00000597649 ZNF280CQ8ND82 737 aa20.36■□□□□ 0.85
SHKBP1-215ENST00000597649 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.36■□□□□ 0.85
SHKBP1-215ENST00000597649 HMG20BQ9P0W2 317 aa20.36■□□□□ 0.85
SHKBP1-215ENST00000597649 A0A1W2PPC1 479 aa20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 CAPN2P17655 700 aa20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 MNX1P50219 401 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 HMGCS2P54868 508 aa20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 NSUN4Q96CB9 384 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 OSBPL5Q9H0X9 879 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 DOCK1Q14185 1865 aa20.35■□□□□ 0.85
SHKBP1-215ENST00000597649 CAP2P40123 477 aa20.34■□□□□ 0.85
SHKBP1-215ENST00000597649 NECAB2Q7Z6G3 386 aa20.34■□□□□ 0.85
SHKBP1-215ENST00000597649 ASCC2Q9H1I8 757 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-215ENST00000597649 PNMA3Q9UL41 463 aa20.34■□□□□ 0.85
SHKBP1-215ENST00000597649 LAMA2P24043 3122 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 SRGAP3O43295 1099 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 PEX10O60683 326 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 MVPQ14764 893 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 SPATA5Q8NB90 893 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 NEUROD6Q96NK8 337 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 GDF15Q99988 308 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 API5Q9BZZ5 524 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 HDAC5Q9UQL6 1122 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 AKAP2Q9Y2D5 859 aa20.33■□□□□ 0.85
SHKBP1-215ENST00000597649 GCLCP48506 637 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-215ENST00000597649 JAG1P78504 1218 aa20.32■□□□□ 0.84
SHKBP1-215ENST00000597649 SH3D19Q5HYK7 790 aa20.32■□□□□ 0.84
SHKBP1-215ENST00000597649 SLC17A8Q8NDX2 589 aa20.32■□□□□ 0.84
SHKBP1-215ENST00000597649 DNAH12Q6ZR08 3092 aa20.32■□□□□ 0.84
SHKBP1-215ENST00000597649 ZBED9Q6R2W3 1325 aa20.31■□□□□ 0.84
SHKBP1-215ENST00000597649 USP17L5A8MUK1 530 aa20.31■□□□□ 0.84
SHKBP1-215ENST00000597649 HMGCRP04035 888 aa20.31■□□□□ 0.84
SHKBP1-215ENST00000597649 MTX1Q13505 466 aa20.31■□□□□ 0.84
SHKBP1-215ENST00000597649 ALPK3Q96L96 1907 aa20.31■□□□□ 0.84
SHKBP1-215ENST00000597649 RPTORQ8N122 1335 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 MAP4K4O95819 1239 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 LDHCP07864 332 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 GSTO1P78417 241 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 C7orf61Q8IZ16 206 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 ANKLE1Q8NAG6 615 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 SH3RF3Q8TEJ3 882 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 RAI14Q9P0K7 980 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 MORF4L1Q9UBU8 362 aa20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 ZMYND8Q9ULU4 1186 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-215ENST00000597649 DLL1O00548 723 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 ARID4AP29374 1257 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 BMP8BP34820 402 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 MCAMP43121 646 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 SHROOM1Q2M3G4 852 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 TEX11Q8IYF3 940 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 TRIB2Q92519 343 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 P2RX7Q99572 595 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 TBC1D2Q9BYX2 928 aa20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 HMX1Q9NP08 348 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-215ENST00000597649 CT47B1P0C2W7 299 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 RARSP54136 660 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 PABPC4Q13310 644 aaKnown RBP eCLIP20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 WDR18Q9BV38 432 aa20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 NBPF3Q9H094 633 aa20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 TXNRD2Q9NNW7 524 aa20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 COL2A1P02458 1487 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-215ENST00000597649 GNAI3P08754 354 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 SYN1P17600 705 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 CYP2B6P20813 491 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 POTEEQ6S8J3 1075 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 DNAJC18Q9H819 358 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 PI4KBQ9UBF8 816 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 OGDHLQ9ULD0 1010 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 UNC80Q8N2C7 3258 aa20.27■□□□□ 0.84
SHKBP1-215ENST00000597649 LOC285556D6RIA3 1793 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 HOXA7P31268 230 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 BACE1P56817 501 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 MTMR2Q13614 643 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 GORABQ5T7V8 394 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 MAP3K21Q5TCX8 1036 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 C11orf49Q9H6J7 331 aa20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 HERC5Q9UII4 1024 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-215ENST00000597649 PNMA6EA0A0J9YXQ4 647 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 Q3C1V9 767 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 METTL16Q86W50 562 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 ARHGAP45Q92619 1136 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 AS3MTQ9HBK9 375 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 SNRKQ9NRH2 765 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 LRP2BPQ9P2M1 347 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 RBPJLQ9UBG7 517 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 TNNQ9UQP3 1299 aa20.25■□□□□ 0.83
SHKBP1-215ENST00000597649 PLXNB2O15031 1838 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms