RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PRRT2Q7Z6L0 340 aaPredicted RBP12.86□□□□□ -0.35
LIG1-213ENST00000596672 AACSQ86V21 672 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 MAPKAPK5Q8IW41 473 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 RHPN1Q8TCX5 695 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 MGAMO43451 1857 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 MYH1P12882 1939 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 RBBP6Q7Z6E9 1792 aaKnown RBP12.85□□□□□ -0.35
LIG1-213ENST00000596672 APBB1O00213 710 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 CXCL11O14625 94 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 CTNND1O60716 968 aaKnown RBP12.85□□□□□ -0.35
LIG1-213ENST00000596672 LDHCP07864 332 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 BCRP11274 1271 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 LACTBP83111 547 aaPredicted RBP12.85□□□□□ -0.35
LIG1-213ENST00000596672 TREML2Q5T2D2 321 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 SLF2Q8IX21 1173 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 TGFBRAP1Q8WUH2 860 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 ARMC5Q96C12 935 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 TRIM47Q96LD4 638 aa12.85□□□□□ -0.35
LIG1-213ENST00000596672 ZCCHC17Q9NP64 241 aaKnown RBP12.85□□□□□ -0.35
LIG1-213ENST00000596672 CYP7A1P22680 504 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 GSTO1P78417 241 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 SLC4A8Q2Y0W8 1093 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 POTEEQ6S8J3 1075 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 METTL16Q86W50 562 aaKnown RBP12.84□□□□□ -0.35
LIG1-213ENST00000596672 MIGA1Q8NAN2 632 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 SAP30BPQ9UHR5 308 aaKnown RBP12.84□□□□□ -0.35
LIG1-213ENST00000596672 PALD1Q9ULE6 856 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 FLT1P17948 1338 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 LOC285556D6RIA3 1793 aa12.84□□□□□ -0.35
LIG1-213ENST00000596672 DDX60LQ5H9U9 1706 aaKnown RBP12.83□□□□□ -0.36
LIG1-213ENST00000596672 TRIM75PA6NK02 468 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 SMIM22K7EJ46 135 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 PEX10O60683 326 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 CAP2P40123 477 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 MAGEB6Q8N7X4 407 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 ZNF333Q96JL9 665 aa12.83□□□□□ -0.36
LIG1-213ENST00000596672 RIOK1Q9BRS2 568 aaKnown RBP12.83□□□□□ -0.36
LIG1-213ENST00000596672 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.83□□□□□ -0.36
LIG1-213ENST00000596672 TCRBV5S4A2TA0A5A2 114 aa12.82□□□□□ -0.36
LIG1-213ENST00000596672 SMARCA5O60264 1052 aaPredicted RBP12.82□□□□□ -0.36
LIG1-213ENST00000596672 IDH1O75874 414 aaKnown RBP12.82□□□□□ -0.36
LIG1-213ENST00000596672 MAP4K4O95819 1239 aaPredicted RBP12.82□□□□□ -0.36
LIG1-213ENST00000596672 EN2P19622 333 aaPredicted RBP12.82□□□□□ -0.36
LIG1-213ENST00000596672 SPP2Q13103 211 aa12.82□□□□□ -0.36
LIG1-213ENST00000596672 RPAP2Q8IXW5 612 aaPredicted RBP12.82□□□□□ -0.36
LIG1-213ENST00000596672 SH3TC2Q8TF17 1288 aa12.82□□□□□ -0.36
LIG1-213ENST00000596672 PICK1Q9NRD5 415 aa12.82□□□□□ -0.36
LIG1-213ENST00000596672 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
LIG1-213ENST00000596672 OSBPP22059 807 aa12.81□□□□□ -0.36
LIG1-213ENST00000596672 PSMC4P43686 418 aa12.81□□□□□ -0.36
LIG1-213ENST00000596672 GADL1Q6ZQY3 521 aa12.81□□□□□ -0.36
LIG1-213ENST00000596672 GABRQQ9UN88 632 aa12.81□□□□□ -0.36
LIG1-213ENST00000596672 RANBP2P49792 3224 aaKnown RBP12.8□□□□□ -0.36
LIG1-213ENST00000596672 GDF11O95390 407 aa12.8□□□□□ -0.36
LIG1-213ENST00000596672 MYCP01106 439 aaPredicted RBP12.8□□□□□ -0.36
LIG1-213ENST00000596672 MTFR1Q15390 333 aa12.8□□□□□ -0.36
LIG1-213ENST00000596672 BCL11AQ9H165 835 aa12.8□□□□□ -0.36
LIG1-213ENST00000596672 PI4KBQ9UBF8 816 aa12.8□□□□□ -0.36
LIG1-213ENST00000596672 PLXNB2O15031 1838 aa12.8□□□□□ -0.36
LIG1-213ENST00000596672 BAZ2AQ9UIF9 1905 aaKnown RBP12.8□□□□□ -0.36
LIG1-213ENST00000596672 TRIOBPQ9H2D6 2365 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 BAG3O95817 575 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 PDE6AP16499 860 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 PLCD1P51178 756 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 HMGCS2P54868 508 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 PDE3AQ14432 1141 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 ERC1Q8IUD2 1116 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 KIF1BPQ96EK5 621 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 SRRDQ9UH36 339 aa12.79□□□□□ -0.36
LIG1-213ENST00000596672 GOLIM4O00461 696 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 CYP2D6P10635 497 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 GUCY1A2P33402 732 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 PRKCZQ05513 592 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 SH3D19Q5HYK7 790 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 FASTKD5Q7L8L6 764 aaKnown RBP12.78□□□□□ -0.36
LIG1-213ENST00000596672 ZNF280CQ8ND82 737 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 HERC5Q9UII4 1024 aaKnown RBP12.78□□□□□ -0.36
LIG1-213ENST00000596672 AGTPBP1Q9UPW5 1226 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 PCDHB15Q9Y5E8 787 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 MYH7P12883 1935 aa12.78□□□□□ -0.36
LIG1-213ENST00000596672 NAV1Q8NEY1 1877 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 USP17L5A8MUK1 530 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 PRKAB2O43741 272 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 MS4A1P11836 297 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 SHMT1P34896 483 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 TATDN1Q6P1N9 297 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 FOXP4Q8IVH2 680 aaPredicted RBP12.77□□□□□ -0.37
LIG1-213ENST00000596672 LCORLQ8N3X6 602 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIG1-213ENST00000596672 SHISA4Q96DD7 197 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 PARK7Q99497 189 aaKnown RBP12.77□□□□□ -0.37
LIG1-213ENST00000596672 DNAJC2Q99543 621 aaKnown RBP12.77□□□□□ -0.37
LIG1-213ENST00000596672 WDR18Q9BV38 432 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 DHX36Q9H2U1 1008 aaKnown RBP12.77□□□□□ -0.37
LIG1-213ENST00000596672 BOLA2Q9H3K6 86 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 EMILIN3Q9NT22 766 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 ZBTB21Q9ULJ3 1066 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 SLC45A1Q9Y2W3 748 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 ZNF532Q9HCE3 1301 aa12.77□□□□□ -0.37
LIG1-213ENST00000596672 RAB11FIP3O75154 756 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms