RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.57■□□□□ 0.4
VRK3-206ENST00000594090 HERC5Q9UII4 1024 aaKnown RBP17.57■□□□□ 0.4
VRK3-206ENST00000594090 ATAD5Q96QE3 1844 aa17.57■□□□□ 0.4
VRK3-206ENST00000594090 ZFYP08048 801 aaPredicted RBP17.56■□□□□ 0.4
VRK3-206ENST00000594090 SLC4A8Q2Y0W8 1093 aa17.56■□□□□ 0.4
VRK3-206ENST00000594090 SDR42E1Q8WUS8 393 aa17.56■□□□□ 0.4
VRK3-206ENST00000594090 PUS7LQ9H0K6 701 aaKnown RBP17.56■□□□□ 0.4
VRK3-206ENST00000594090 SAGE1Q9NXZ1 904 aa17.56■□□□□ 0.4
VRK3-206ENST00000594090 RNF113AO15541 343 aaKnown RBP17.55■□□□□ 0.4
VRK3-206ENST00000594090 HLA-DOAP06340 250 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 PPIL2Q13356 520 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 LRRFIP1Q32MZ4 808 aaKnown RBP17.55■□□□□ 0.4
VRK3-206ENST00000594090 METTL16Q86W50 562 aaKnown RBP17.55■□□□□ 0.4
VRK3-206ENST00000594090 SCYL3Q8IZE3 742 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 APPBP2Q92624 585 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 FSD1Q9BTV5 496 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 RNF186Q9NXI6 227 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 TSKSQ9UJT2 592 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 PLEKHM2Q8IWE5 1019 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 CRACR2BQ8N4Y2 399 aaPredicted RBP17.55■□□□□ 0.4
VRK3-206ENST00000594090 MS4A4AQ96JQ5 239 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 DNAJC18Q9H819 358 aa17.55■□□□□ 0.4
VRK3-206ENST00000594090 CTNND1O60716 968 aaKnown RBP17.54■□□□□ 0.4
VRK3-206ENST00000594090 TRPA1O75762 1119 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 GTF2A2P52657 109 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 LBX1P52954 281 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 INHBEP58166 350 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 PPATQ06203 517 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 FOXP4Q8IVH2 680 aaPredicted RBP17.54■□□□□ 0.4
VRK3-206ENST00000594090 OSBP2Q969R2 916 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 EVI5LQ96CN4 794 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 OSBPL3Q9H4L5 887 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 DCP1AQ9NPI6 582 aaPredicted RBP17.54■□□□□ 0.4
VRK3-206ENST00000594090 PICK1Q9NRD5 415 aa17.54■□□□□ 0.4
VRK3-206ENST00000594090 PHIPQ8WWQ0 1821 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 TESPA1A2RU30 521 aaPredicted RBP17.53■□□□□ 0.4
VRK3-206ENST00000594090 IRF6O14896 467 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 PRKAB2O43741 272 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 IFNL1Q8IU54 200 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 TRIM34Q9BYJ4 488 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 EHD4Q9H223 541 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 ATP8A2Q9NTI2 1148 aa17.53■□□□□ 0.4
VRK3-206ENST00000594090 BAZ2AQ9UIF9 1905 aaKnown RBP17.52■□□□□ 0.4
VRK3-206ENST00000594090 M0R2C6 588 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 IGF2BP3O00425 579 aaKnown RBP eCLIP17.52■□□□□ 0.4
VRK3-206ENST00000594090 POLR3DP05423 398 aaPredicted RBP17.52■□□□□ 0.4
VRK3-206ENST00000594090 PTPRAP18433 802 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 RRP1BQ14684 758 aaKnown RBP17.52■□□□□ 0.4
VRK3-206ENST00000594090 TTC6Q86TZ1 520 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 BRI3BPQ8WY22 251 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 PRDM10Q9NQV6 1147 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 MCM9Q9NXL9 1143 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 SERPINB13Q9UIV8 391 aa17.52■□□□□ 0.4
VRK3-206ENST00000594090 CCL15-CCL14A0A0B4J2E2 113 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 GPAA1O43292 621 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 PDE4AP27815 886 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 CAP2P40123 477 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 PLCD1P51178 756 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 SNAPC2Q13487 334 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 CCL15Q16663 113 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 ZMYM1Q5SVZ6 1142 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 STRBPQ96SI9 672 aaKnown RBP17.51■□□□□ 0.39
VRK3-206ENST00000594090 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.51■□□□□ 0.39
VRK3-206ENST00000594090 KCNH4Q9UQ05 1017 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 SLC4A4Q9Y6R1 1079 aa17.51■□□□□ 0.39
VRK3-206ENST00000594090 CETPP11597 493 aa17.5■□□□□ 0.39
VRK3-206ENST00000594090 SEC62Q99442 399 aaKnown RBP17.5■□□□□ 0.39
VRK3-206ENST00000594090 PTPN18Q99952 460 aa17.5■□□□□ 0.39
VRK3-206ENST00000594090 ZHX2Q9Y6X8 837 aa17.5■□□□□ 0.39
VRK3-206ENST00000594090 PTPRFP10586 1907 aa17.49■□□□□ 0.39
VRK3-206ENST00000594090 TRIM6-TRIM34B2RNG4 842 aa17.49■□□□□ 0.39
VRK3-206ENST00000594090 ALDH1A1P00352 501 aa17.49■□□□□ 0.39
VRK3-206ENST00000594090 EVX2Q03828 476 aa17.49■□□□□ 0.39
VRK3-206ENST00000594090 CCDC84Q86UT8 332 aaPredicted RBP17.49■□□□□ 0.39
VRK3-206ENST00000594090 DDRGK1Q96HY6 314 aa17.49■□□□□ 0.39
VRK3-206ENST00000594090 CYP2D6P10635 497 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 GABPAQ06546 454 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 OTUD7BQ6GQQ9 843 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 CFHR5Q9BXR6 569 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 AFG3L2Q9Y4W6 797 aa17.48■□□□□ 0.39
VRK3-206ENST00000594090 CXCL11O14625 94 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 TBC1D8O95759 1140 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 ASNSP08243 561 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 SHROOM1Q2M3G4 852 aaPredicted RBP17.47■□□□□ 0.39
VRK3-206ENST00000594090 COL13A1Q5TAT6 717 aaPredicted RBP17.47■□□□□ 0.39
VRK3-206ENST00000594090 TICAM2Q86XR7 235 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 FAM43AQ8N2R8 423 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 RILPL2Q969X0 211 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 GSG1L2A8MUP6 293 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 BTBD19C9JJ37 291 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 USP17L12C9JPN9 530 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 USP17L21D6R901 530 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 GDF11O95390 407 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 CENPBP07199 599 aaPredicted RBP17.47■□□□□ 0.39
VRK3-206ENST00000594090 GNAT2P19087 354 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 SHMT1P34896 483 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 JAG1P78504 1218 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 C12orf60Q5U649 245 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 GIMAP6Q6P9H5 292 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms