RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 FAM237AA0A1B0GTK4 181 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 GPAA1O43292 621 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 PDE8AO60658 829 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 ATP1A3P13637 1013 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 GNL2Q13823 731 aaKnown RBP12.47□□□□□ -0.41
VPS4B-206ENST00000591475 CPLX2Q6PUV4 134 aaKnown RBP12.47□□□□□ -0.41
VPS4B-206ENST00000591475 BICDL1Q6ZP65 573 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 FCHSD1Q86WN1 690 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 CREBRFQ8IUR6 639 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 SYNE4Q8N205 404 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 SRRTQ9BXP5 876 aaKnown RBP12.47□□□□□ -0.41
VPS4B-206ENST00000591475 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 PUS7LQ9H0K6 701 aaKnown RBP12.47□□□□□ -0.41
VPS4B-206ENST00000591475 DNAI1Q9UI46 699 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 CSF1RP07333 972 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 GYS1P13807 737 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 ZAP70P43403 619 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 METAP2P50579 478 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS4B-206ENST00000591475 CFAP100Q494V2 611 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 ARHGAP29Q52LW3 1261 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 VPS37DQ86XT2 251 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 LRRN4CLQ8ND94 238 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS4B-206ENST00000591475 TMX1Q9H3N1 280 aa12.46□□□□□ -0.41
VPS4B-206ENST00000591475 ARGLU1Q9NWB6 273 aaPredicted RBP12.46□□□□□ -0.41
VPS4B-206ENST00000591475 ANGEL1Q9UNK9 670 aaKnown RBP12.46□□□□□ -0.41
VPS4B-206ENST00000591475 AKAP11Q9UKA4 1901 aa12.46□□□□□ -0.42
VPS4B-206ENST00000591475 ZSCAN12O43309 604 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 CLCN6P51797 869 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 CTSWP56202 376 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 PNOCQ13519 176 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 SCARF1Q14162 830 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 PTPAQ15257 358 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 RESP18Q5W5W9 173 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 KRT40Q6A162 431 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 SHC4Q6S5L8 630 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 TPTE2Q6XPS3 522 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 VSTM4Q8IW00 320 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 UBXN4Q92575 508 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 DPF2Q92785 391 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 CCDC66A2RUB6 948 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 CUTAO60888 179 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 TOP1P11387 765 aaKnown RBP12.45□□□□□ -0.42
VPS4B-206ENST00000591475 GTF2E1P29083 439 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-206ENST00000591475 TAF7LQ5H9L4 462 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 NBPF5PQ86XG9 351 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-206ENST00000591475 MNS1Q8NEH6 495 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 TTLL11Q8NHH1 800 aa12.45□□□□□ -0.42
VPS4B-206ENST00000591475 CHD4Q14839 1912 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 SH2B2O14492 632 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 TPM1P09493 284 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 TRIM29Q14134 588 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 SLC15A2Q16348 729 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 TRIM65Q6PJ69 517 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 DEFB132Q7Z7B7 95 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 REXO1L1PQ8IX06 675 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 AIFM3Q96NN9 605 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 MAP3K14Q99558 947 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 FHOD1Q9Y613 1164 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 MYO5AQ9Y4I1 1855 aaKnown RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 URI1O94763 535 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 IFIT5Q13325 482 aaKnown RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 NFIXQ14938 502 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 CCDC102BQ68D86 513 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 TMCO3Q6UWJ1 677 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 CYB5R4Q7L1T6 521 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 COL23A1Q86Y22 540 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 NLGN1Q8N2Q7 840 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 NBPF3Q9H094 633 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 STK32BQ9NY57 414 aa12.44□□□□□ -0.42
VPS4B-206ENST00000591475 HOOK1Q9UJC3 728 aaKnown RBP12.44□□□□□ -0.42
VPS4B-206ENST00000591475 GOLGA6L9A6NEM1 432 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 ARHGAP6O43182 974 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 PNMA6AP0CW24 399 aaPredicted RBP12.43□□□□□ -0.42
VPS4B-206ENST00000591475 APOA5Q6Q788 366 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 KRBA2Q6ZNG9 492 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 METTL16Q86W50 562 aaKnown RBP12.43□□□□□ -0.42
VPS4B-206ENST00000591475 CNNM3Q8NE01 707 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 TMEM87BQ96K49 555 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 NOL10Q9BSC4 688 aaKnown RBP12.43□□□□□ -0.42
VPS4B-206ENST00000591475 FANCLQ9NW38 375 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 PNPLA7Q6ZV29 1317 aa12.43□□□□□ -0.42
VPS4B-206ENST00000591475 EFCAB8A8MWE9 144 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 TMEM232C9JQI7 657 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 TADA3O75528 432 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ADD2P35612 726 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 IARSP41252 1262 aaKnown RBP12.42□□□□□ -0.42
VPS4B-206ENST00000591475 LONRF3Q496Y0 759 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ERFEQ4G0M1 354 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 SLC10A5Q5PT55 438 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 TBC1D10CQ8IV04 446 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ELOA2Q8IYF1 753 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-206ENST00000591475 MPHOSPH8Q99549 860 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS4B-206ENST00000591475 KCNH3Q9ULD8 1083 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ZBTB43O43298 467 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ZRANB2O95218 330 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ITGA6P23229 1130 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 CDC27P30260 824 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms