RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZSCAN29Q8IWY8 852 aaPredicted RBP12.78□□□□□ -0.36
LIG3-212ENST00000590181 ZKSCAN4Q969J2 545 aaPredicted RBP12.78□□□□□ -0.36
LIG3-212ENST00000590181 PICK1Q9NRD5 415 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 PI4KBQ9UBF8 816 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 CPA4Q9UI42 421 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 PHIPQ8WWQ0 1821 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 CYP2E1P05181 493 aaPredicted RBP12.77□□□□□ -0.37
LIG3-212ENST00000590181 NFIAQ12857 509 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 FASTKD5Q7L8L6 764 aaKnown RBP12.77□□□□□ -0.37
LIG3-212ENST00000590181 DPF3Q92784 378 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 TRIM47Q96LD4 638 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 OSBPL5Q9H0X9 879 aaPredicted RBP12.77□□□□□ -0.37
LIG3-212ENST00000590181 RBM27Q9P2N5 1060 aaKnown RBP12.77□□□□□ -0.37
LIG3-212ENST00000590181 SRRDQ9UH36 339 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 KCNH4Q9UQ05 1017 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 EXOC6BQ9Y2D4 811 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.77□□□□□ -0.37
LIG3-212ENST00000590181 MYPNQ86TC9 1320 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 ADGRA2Q96PE1 1338 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 RFX7Q2KHR2 1363 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 LAMA3Q16787 3333 aa12.77□□□□□ -0.37
LIG3-212ENST00000590181 OSBPP22059 807 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 CTGFP29279 349 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 GRK4P32298 578 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 PSMC4P43686 418 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 TBC1D9Q6ZT07 1266 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 MIGA2Q7L4E1 593 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 TEX11Q8IYF3 940 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 NKX2-3Q8TAU0 364 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 RAET1EQ8TD07 263 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 HTATIP2Q9BUP3 242 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 LRRCC1Q9C099 1032 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 CCDC8Q9H0W5 538 aaPredicted RBP12.76□□□□□ -0.37
LIG3-212ENST00000590181 SLC45A1Q9Y2W3 748 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 MAST2Q6P0Q8 1798 aa12.76□□□□□ -0.37
LIG3-212ENST00000590181 PHF20L1A8MW92 1017 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 CCL5P13501 91 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 ZAP70P43403 619 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 C17orf99Q6UX52 265 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 ANKRD23Q86SG2 305 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 METTL16Q86W50 562 aaKnown RBP12.75□□□□□ -0.37
LIG3-212ENST00000590181 SIRT2Q8IXJ6 389 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 SCYL3Q8IZE3 742 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 ZNF384Q8TF68 577 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 ATAD5Q96QE3 1844 aa12.75□□□□□ -0.37
LIG3-212ENST00000590181 LOC285556D6RIA3 1793 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 PDHXO00330 501 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 FARP2O94887 1054 aaPredicted RBP12.74□□□□□ -0.37
LIG3-212ENST00000590181 FMNL1O95466 1100 aaPredicted RBP12.74□□□□□ -0.37
LIG3-212ENST00000590181 ATP5JP18859 108 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 HOXD10P28358 340 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 INPP5BP32019 993 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 GJA8P48165 433 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 PI16Q6UXB8 463 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 GPATCH3Q96I76 525 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIG3-212ENST00000590181 DCTPP1Q9H773 170 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 SNRKQ9NRH2 765 aa12.74□□□□□ -0.37
LIG3-212ENST00000590181 DDX60LQ5H9U9 1706 aaKnown RBP12.74□□□□□ -0.37
LIG3-212ENST00000590181 DDTLA6NHG4 134 aaPredicted RBP12.73□□□□□ -0.37
LIG3-212ENST00000590181 IDH1O75874 414 aaKnown RBP12.73□□□□□ -0.37
LIG3-212ENST00000590181 HLA-DOAP06340 250 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 PTPRAP18433 802 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 CYP7A1P22680 504 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 UBXN2AP68543 259 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 PRKCZQ05513 592 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 LRRFIP1Q32MZ4 808 aaKnown RBP12.73□□□□□ -0.37
LIG3-212ENST00000590181 ZSCAN25Q6NSZ9 544 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 UBE2Q1Q7Z7E8 422 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 PARK7Q99497 189 aaKnown RBP12.73□□□□□ -0.37
LIG3-212ENST00000590181 RNF208Q9H0X6 261 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIG3-212ENST00000590181 BIN2Q9UBW5 565 aaPredicted RBP12.73□□□□□ -0.37
LIG3-212ENST00000590181 FOCADQ5VW36 1801 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 A0A0C4DFX4 3053 aa12.73□□□□□ -0.37
LIG3-212ENST00000590181 GJB1P08034 283 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 ASNSP08243 561 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 FCGRTP55899 365 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 PICALMQ13492 652 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 TTC6Q86TZ1 520 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 TICAM2Q86XR7 235 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 ZFPM1Q8IX07 1006 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 SLAIN1Q8ND83 568 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 TRIM34Q9BYJ4 488 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 PRO3102Q9H379 93 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 AS3MTQ9HBK9 375 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 IL1RAPL2Q9NP60 686 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 DDX4Q9NQI0 724 aaKnown RBP12.72□□□□□ -0.37
LIG3-212ENST00000590181 AATFQ9NY61 560 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIG3-212ENST00000590181 NR2E3Q9Y5X4 410 aa12.72□□□□□ -0.37
LIG3-212ENST00000590181 CAP2P40123 477 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 PABPC4Q13310 644 aaKnown RBP eCLIP12.71□□□□□ -0.37
LIG3-212ENST00000590181 MOGSQ13724 837 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 SH3BP5LQ7L8J4 393 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 PROCA1Q8NCQ7 364 aaPredicted RBP12.71□□□□□ -0.37
LIG3-212ENST00000590181 SH3RF3Q8TEJ3 882 aaPredicted RBP12.71□□□□□ -0.37
LIG3-212ENST00000590181 U2AF1L4Q8WU68 220 aaKnown RBP12.71□□□□□ -0.37
LIG3-212ENST00000590181 UNC93B1Q9H1C4 597 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 EHD4Q9H223 541 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 PIH1D3Q9NQM4 214 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms