RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 TGFB2P61812 414 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 KIF13BQ9NQT8 1826 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 H3BQV1 296 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 PPFIA3O75145 1194 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 PRPF40AO75400 957 aaKnown RBP23.23■■□□□ 1.31
TRIM47-204ENST00000587339 RXRAP19793 462 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 FKBP1AP62942 108 aaKnown RBP23.23■■□□□ 1.31
TRIM47-204ENST00000587339 IFFO2Q5TF58 517 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 ZSCAN10Q96SZ4 725 aaPredicted RBP23.23■■□□□ 1.31
TRIM47-204ENST00000587339 LMBRD1Q9NUN5 540 aa23.23■■□□□ 1.31
TRIM47-204ENST00000587339 USP17L3A6NCW0 530 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 USP17L4A6NCW7 530 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 POLR3DP05423 398 aaPredicted RBP23.22■■□□□ 1.31
TRIM47-204ENST00000587339 SCNN1DP51172 638 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 DACT2Q5SW24 774 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 USP17L1Q7RTZ2 530 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 TEKT1Q969V4 418 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 FLT1P17948 1338 aa23.22■■□□□ 1.31
TRIM47-204ENST00000587339 GOLGA8AA7E2F4 631 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 CPLX2Q6PUV4 134 aaKnown RBP23.21■■□□□ 1.31
TRIM47-204ENST00000587339 HHIPL2Q6UWX4 724 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 PSMD1Q99460 953 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 MYL10Q9BUA6 226 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 SAP30BPQ9UHR5 308 aaKnown RBP23.21■■□□□ 1.31
TRIM47-204ENST00000587339 ROBO3Q96MS0 1386 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 ADD1P35611 737 aaKnown RBP23.21■■□□□ 1.31
TRIM47-204ENST00000587339 SEC23AQ15436 765 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 FERMT3Q86UX7 667 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 CCDC144CPQ8IYA2 1237 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 PIM2Q9P1W9 311 aa23.21■■□□□ 1.31
TRIM47-204ENST00000587339 NAV1Q8NEY1 1877 aa23.2■■□□□ 1.31
TRIM47-204ENST00000587339 CDKL5O76039 1030 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 FDPSP14324 419 aaKnown RBP23.2■■□□□ 1.3
TRIM47-204ENST00000587339 NT5C2P49902 561 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 PLCD1P51178 756 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 ENAHQ8N8S7 591 aaPredicted RBP23.2■■□□□ 1.3
TRIM47-204ENST00000587339 TSPY2A6NKD2 308 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 CDC27P30260 824 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 KIAA0825Q8IV33 1275 aa23.2■■□□□ 1.3
TRIM47-204ENST00000587339 UPF1Q92900 1129 aaKnown RBP eCLIP23.2■■□□□ 1.3
TRIM47-204ENST00000587339 DDX49Q9Y6V7 483 aaKnown RBP23.2■■□□□ 1.3
TRIM47-204ENST00000587339 RCAN1P53805 252 aa23.19■■□□□ 1.3
TRIM47-204ENST00000587339 GSE1Q14687 1217 aa23.19■■□□□ 1.3
TRIM47-204ENST00000587339 IFIT1BQ5T764 474 aaKnown RBP23.19■■□□□ 1.3
TRIM47-204ENST00000587339 SOGA3Q5TF21 947 aa23.19■■□□□ 1.3
TRIM47-204ENST00000587339 DYNLL2Q96FJ2 89 aa23.19■■□□□ 1.3
TRIM47-204ENST00000587339 ORC3Q9UBD5 711 aaPredicted RBP23.19■■□□□ 1.3
TRIM47-204ENST00000587339 FAM47AQ5JRC9 791 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 ZNF654Q8IZM8 581 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 MKNK2Q9HBH9 465 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 SCN9AQ15858 1988 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 NID2Q14112 1375 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 CDK5RAP2Q96SN8 1893 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 CRKP46108 304 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 MRIQ9BWK5 157 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 ZNF287Q9HBT7 754 aa23.18■■□□□ 1.3
TRIM47-204ENST00000587339 PPP1R1BQ9UD71 204 aaPredicted RBP23.18■■□□□ 1.3
TRIM47-204ENST00000587339 NCLP19338 710 aaKnown RBP23.17■■□□□ 1.3
TRIM47-204ENST00000587339 DNM1Q05193 864 aaKnown RBP23.17■■□□□ 1.3
TRIM47-204ENST00000587339 KLHL40Q2TBA0 621 aa23.17■■□□□ 1.3
TRIM47-204ENST00000587339 GDPD2Q9HCC8 539 aa23.17■■□□□ 1.3
TRIM47-204ENST00000587339 FAM217BQ9NTX9 383 aaPredicted RBP23.17■■□□□ 1.3
TRIM47-204ENST00000587339 USP40Q9NVE5 1235 aa23.17■■□□□ 1.3
TRIM47-204ENST00000587339 CNPY2Q9Y2B0 182 aa23.17■■□□□ 1.3
TRIM47-204ENST00000587339 FOSBP53539 338 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 HDLBPQ00341 1268 aaKnown RBP23.16■■□□□ 1.3
TRIM47-204ENST00000587339 PICALMQ13492 652 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 APOBEC3HQ6NTF7 200 aaKnown RBP23.16■■□□□ 1.3
TRIM47-204ENST00000587339 ZDHHC15Q96MV8 337 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 GZF1Q9H116 711 aaPredicted RBP23.16■■□□□ 1.3
TRIM47-204ENST00000587339 CCDC196A0A1B0GTZ2 297 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 YDJCA8MPS7 323 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 NTRK3Q16288 839 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 RTN1Q16799 776 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 LARGE2Q8N3Y3 721 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 NUP133Q8WUM0 1156 aa23.16■■□□□ 1.3
TRIM47-204ENST00000587339 ZSCAN16Q9H4T2 348 aaPredicted RBP23.16■■□□□ 1.3
TRIM47-204ENST00000587339 ZNF277Q9NRM2 450 aaPredicted RBP23.16■■□□□ 1.3
TRIM47-204ENST00000587339 DDX60LQ5H9U9 1706 aaKnown RBP23.15■■□□□ 1.3
TRIM47-204ENST00000587339 WDHD1O75717 1129 aaPredicted RBP23.15■■□□□ 1.3
TRIM47-204ENST00000587339 TFAP4Q01664 338 aa23.15■■□□□ 1.3
TRIM47-204ENST00000587339 DALRD3Q5D0E6 543 aaKnown RBP23.15■■□□□ 1.3
TRIM47-204ENST00000587339 CDC42EP5Q6NZY7 148 aa23.15■■□□□ 1.3
TRIM47-204ENST00000587339 CATIPQ7Z7H3 387 aa23.15■■□□□ 1.3
TRIM47-204ENST00000587339 ZNF444Q8N0Y2 327 aaPredicted RBP23.15■■□□□ 1.3
TRIM47-204ENST00000587339 FANCBQ8NB91 859 aa23.15■■□□□ 1.3
TRIM47-204ENST00000587339 VPS33BQ9H267 617 aa23.15■■□□□ 1.3
TRIM47-204ENST00000587339 NMT2O60551 498 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 IARSP41252 1262 aaKnown RBP23.14■■□□□ 1.3
TRIM47-204ENST00000587339 PPP2R5BQ15173 497 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 USP48Q86UV5 1035 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 SLC44A5Q8NCS7 719 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 PHKBQ93100 1093 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 C8orf76Q96K31 380 aa23.14■■□□□ 1.3
TRIM47-204ENST00000587339 RBM5P52756 815 aaKnown RBP eCLIP23.14■■□□□ 1.299e-8■■■□□ 15.5
TRIM47-204ENST00000587339 C16orf86Q6ZW13 317 aa23.14■■□□□ 1.29
TRIM47-204ENST00000587339 TMEM87AQ8NBN3 555 aa23.14■■□□□ 1.29
TRIM47-204ENST00000587339 SERPINA10Q9UK55 444 aa23.14■■□□□ 1.29
TRIM47-204ENST00000587339 TSPY3P0CV98 308 aa23.13■■□□□ 1.29
TRIM47-204ENST00000587339 TSPY8P0CW00 308 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms