RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 TIAF1O95411 115 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 PARNO95453 639 aaKnown RBP6.82□□□□□ -1.32
SS18-223ENST00000583595 CYP11A1P05108 521 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 DRD2P14416 443 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 ITPKAP23677 461 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 MAOBP27338 520 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 SOX9P48436 509 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 POU4F3Q15319 338 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 LILRB2Q8N423 598 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 DEPDC7Q96QD5 511 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 NT5C1AQ9BXI3 368 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 ZNF576Q9H609 170 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 METTL14Q9HCE5 456 aaKnown RBP6.82□□□□□ -1.32
SS18-223ENST00000583595 ABCB6Q9NP58 842 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 UBP1Q9NZI7 540 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 AKAP2Q9Y2D5 859 aa6.82□□□□□ -1.32
SS18-223ENST00000583595 TMEM238LA0A1B0GVL6 79 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 DNAJC6O75061 913 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 B3GALT4O96024 378 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 MAP4P27816 1152 aaKnown RBP6.81□□□□□ -1.32
SS18-223ENST00000583595 RXRBP28702 533 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 SSTR4P31391 388 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 PWP1Q13610 501 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 RASA3Q14644 834 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 SGO2Q562F6 1265 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 ZDHHC13Q8IUH4 622 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 DDX54Q8TDD1 881 aaKnown RBP6.81□□□□□ -1.32
SS18-223ENST00000583595 DNAJC7Q99615 494 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 DBNDD2Q9BQY9 259 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 SPC25Q9HBM1 224 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 FANCLQ9NW38 375 aa6.81□□□□□ -1.32
SS18-223ENST00000583595 GREM1O60565 184 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 TGFB1P01137 390 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 PF4P02776 101 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 CTSBP07858 339 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 GARTP22102 1010 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 PLEKHG4Q58EX7 1191 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 PRPF40BQ6NWY9 871 aaKnown RBP6.8□□□□□ -1.32
SS18-223ENST00000583595 RPUSD2Q8IZ73 545 aaKnown RBP6.8□□□□□ -1.32
SS18-223ENST00000583595 SH3TC2Q8TF17 1288 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 PSMG3-AS1Q96PY0 264 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 ST7Q9NRC1 585 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 PCMTD2Q9NV79 361 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 SLC52A1Q9NWF4 448 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 TRAK1Q9UPV9 953 aa6.8□□□□□ -1.32
SS18-223ENST00000583595 R3HCC1Q9Y3T6 440 aaKnown RBP6.8□□□□□ -1.32
SS18-223ENST00000583595 SMAD7O15105 426 aaKnown RBP6.79□□□□□ -1.32
SS18-223ENST00000583595 ECEL1O95672 775 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 USP11P51784 963 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 SOX4Q06945 474 aaPredicted RBP6.79□□□□□ -1.32
SS18-223ENST00000583595 CCDC81Q6ZN84 652 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 C2CD4AQ8NCU7 369 aaPredicted RBP6.79□□□□□ -1.32
SS18-223ENST00000583595 PHC3Q8NDX5 983 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 CORO1BQ9BR76 489 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 ZFYVE1Q9HBF4 777 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 PRKAG3Q9UGI9 489 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 SUGT1Q9Y2Z0 365 aa6.79□□□□□ -1.32
SS18-223ENST00000583595 ESYT3A0FGR9 886 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 PPP1R12AO14974 1030 aaPredicted RBP6.78□□□□□ -1.32
SS18-223ENST00000583595 MED26O95402 600 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 CRKP46108 304 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 ZNF157P51786 506 aaPredicted RBP6.78□□□□□ -1.32
SS18-223ENST00000583595 GYS2P54840 703 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 AMPD3Q01432 767 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 RPS26P11Q5JNZ5 115 aaPredicted RBP6.78□□□□□ -1.32
SS18-223ENST00000583595 HP1BP3Q5SSJ5 553 aaPredicted RBP6.78□□□□□ -1.32
SS18-223ENST00000583595 PCNX4Q63HM2 1172 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 CDPF1Q6NVV7 123 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 TPTE2Q6XPS3 522 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 CELF2-AS1Q8N7Q2 184 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 GOLM1Q8NBJ4 401 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 SHKBP1Q8TBC3 707 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 FBLIM1Q8WUP2 373 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 STAG1Q8WVM7 1258 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 NKD1Q969G9 470 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 SHDQ96IW2 340 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 RAD18Q9NS91 495 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 STRIP2Q9ULQ0 834 aa6.78□□□□□ -1.32
SS18-223ENST00000583595 SUPT16HQ9Y5B9 1047 aaKnown RBP6.78□□□□□ -1.32
SS18-223ENST00000583595 FAM95CA0A1B0GW59 222 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 COBLO75128 1261 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 ADH5P11766 374 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 CD97P48960 835 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 FAAP100Q0VG06 881 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 CAMK2GQ13555 558 aaPredicted RBP6.77□□□□□ -1.33
SS18-223ENST00000583595 AKAP4Q5JQC9 854 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 DTHD1Q6ZMT9 781 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 SV2BQ7L1I2 683 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 FAM169BQ8N8A8 192 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 RHOVQ96L33 236 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 MFSD14AQ96MC6 490 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 SRRTQ9BXP5 876 aaKnown RBP6.77□□□□□ -1.33
SS18-223ENST00000583595 KCNQ5Q9NR82 932 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 PPT2Q9UMR5 302 aa6.77□□□□□ -1.33
SS18-223ENST00000583595 G3BP2Q9UN86 482 aaKnown RBP6.77□□□□□ -1.33
SS18-223ENST00000583595 PRR19A6NJB7 356 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 WDR64B1ANS9 1081 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 CDC45O75419 566 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 LIG3P49916 1009 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 APOBRQ0VD83 1088 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms