RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NOL10Q9BSC4 688 aaKnown RBP25.06■■□□□ 1.6
SHMT1-209ENST00000582653 PIH1D3Q9NQM4 214 aaKnown RBP25.06■■□□□ 1.6
SHMT1-209ENST00000582653 ECM2O94769 699 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-209ENST00000582653 OSBPP22059 807 aa25.05■■□□□ 1.6
SHMT1-209ENST00000582653 GADL1Q6ZQY3 521 aa25.05■■□□□ 1.6
SHMT1-209ENST00000582653 ADGRA1Q86SQ6 560 aa25.05■■□□□ 1.6
SHMT1-209ENST00000582653 AATFQ9NY61 560 aaKnown RBP eCLIP25.05■■□□□ 1.6
SHMT1-209ENST00000582653 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-209ENST00000582653 RBBP6Q7Z6E9 1792 aaKnown RBP25.05■■□□□ 1.6
SHMT1-209ENST00000582653 COL2A1P02458 1487 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-209ENST00000582653 RCAN3Q9UKA8 241 aa25.04■■□□□ 1.6
SHMT1-209ENST00000582653 NDUFB9Q9Y6M9 179 aa25.04■■□□□ 1.6
SHMT1-209ENST00000582653 TRIM75PA6NK02 468 aa25.03■■□□□ 1.6
SHMT1-209ENST00000582653 PLCG2P16885 1265 aa25.03■■□□□ 1.6
SHMT1-209ENST00000582653 CCDC84Q86UT8 332 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-209ENST00000582653 TBC1D2Q9BYX2 928 aa25.03■■□□□ 1.6
SHMT1-209ENST00000582653 DHX36Q9H2U1 1008 aaKnown RBP25.03■■□□□ 1.6
SHMT1-209ENST00000582653 IL1RAPL2Q9NP60 686 aa25.03■■□□□ 1.6
SHMT1-209ENST00000582653 PI4KBQ9UBF8 816 aa25.03■■□□□ 1.6
SHMT1-209ENST00000582653 HERC5Q9UII4 1024 aaKnown RBP25.03■■□□□ 1.6
SHMT1-209ENST00000582653 KIAA0100Q14667 2235 aaKnown RBP25.02■■□□□ 1.6
SHMT1-209ENST00000582653 CAP2P40123 477 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 FCGRTP55899 365 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 AACSQ86V21 672 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 ERC1Q8IUD2 1116 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 RAET1EQ8TD07 263 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 ZSWIM8A7E2V4 1837 aa25.02■■□□□ 1.6
SHMT1-209ENST00000582653 MYCP01106 439 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-209ENST00000582653 GRK4P32298 578 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 SPP2Q13103 211 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 SIRT2Q8IXJ6 389 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 ZNF280CQ8ND82 737 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 ZBTB40Q9NUA8 1239 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 DDX19BQ9UMR2 479 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 AGTPBP1Q9UPW5 1226 aa25.01■■□□□ 1.59
SHMT1-209ENST00000582653 MYO5AQ9Y4I1 1855 aaKnown RBP25■■□□□ 1.59
SHMT1-209ENST00000582653 APBB1O00213 710 aa25■■□□□ 1.59
SHMT1-209ENST00000582653 RRP1BQ14684 758 aaKnown RBP25■■□□□ 1.59
SHMT1-209ENST00000582653 FOXP4Q8IVH2 680 aaPredicted RBP25■■□□□ 1.59
SHMT1-209ENST00000582653 RHPN1Q8TCX5 695 aa25■■□□□ 1.59
SHMT1-209ENST00000582653 TGFBRAP1Q8WUH2 860 aa25■■□□□ 1.59
SHMT1-209ENST00000582653 ANTXR1Q9H6X2 564 aa25■■□□□ 1.59
SHMT1-209ENST00000582653 MYPNQ86TC9 1320 aa25■■□□□ 1.59
SHMT1-209ENST00000582653 DYNLL1P63167 89 aaKnown RBP24.99■■□□□ 1.59
SHMT1-209ENST00000582653 METTL16Q86W50 562 aaKnown RBP24.99■■□□□ 1.59
SHMT1-209ENST00000582653 MAPKAPK5Q8IW41 473 aa24.99■■□□□ 1.59
SHMT1-209ENST00000582653 RPAP2Q8IXW5 612 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-209ENST00000582653 PROCA1Q8NCQ7 364 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-209ENST00000582653 BCL11AQ9H165 835 aa24.99■■□□□ 1.59
SHMT1-209ENST00000582653 DOCK1Q14185 1865 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 USP17L5A8MUK1 530 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 IDH1O75874 414 aaKnown RBP24.98■■□□□ 1.59
SHMT1-209ENST00000582653 CYP7A1P22680 504 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 MTFR1Q15390 333 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 HSP90AB4PQ58FF6 505 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 C20orf194Q5TEA3 1177 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 SMCR8Q8TEV9 937 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-209ENST00000582653 GCC1Q96CN9 775 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 PHIPQ8WWQ0 1821 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 MAST2Q6P0Q8 1798 aa24.98■■□□□ 1.59
SHMT1-209ENST00000582653 PRKCZQ05513 592 aa24.97■■□□□ 1.59
SHMT1-209ENST00000582653 TREML2Q5T2D2 321 aa24.97■■□□□ 1.59
SHMT1-209ENST00000582653 PNMA3Q9UL41 463 aa24.97■■□□□ 1.59
SHMT1-209ENST00000582653 SH3D19Q5HYK7 790 aa24.96■■□□□ 1.59
SHMT1-209ENST00000582653 AS3MTQ9HBK9 375 aa24.96■■□□□ 1.59
SHMT1-209ENST00000582653 GABRQQ9UN88 632 aa24.96■■□□□ 1.59
SHMT1-209ENST00000582653 FLT1P17948 1338 aa24.95■■□□□ 1.58
SHMT1-209ENST00000582653 PABPC4Q13310 644 aaKnown RBP eCLIP24.95■■□□□ 1.58
SHMT1-209ENST00000582653 MAGEB6Q8N7X4 407 aa24.95■■□□□ 1.58
SHMT1-209ENST00000582653 MIGA1Q8NAN2 632 aa24.95■■□□□ 1.58
SHMT1-209ENST00000582653 WDR18Q9BV38 432 aa24.95■■□□□ 1.58
SHMT1-209ENST00000582653 PALD1Q9ULE6 856 aa24.95■■□□□ 1.58
SHMT1-209ENST00000582653 HMMRO75330 724 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 UBXN2AP68543 259 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 SLAIN1Q8ND83 568 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 NKX2-3Q8TAU0 364 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 KIF1BPQ96EK5 621 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 SAP30BPQ9UHR5 308 aaKnown RBP24.94■■□□□ 1.58
SHMT1-209ENST00000582653 PTPRFP10586 1907 aa24.94■■□□□ 1.58
SHMT1-209ENST00000582653 ASNSP08243 561 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 FLT3LGP49771 235 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 HMGCS2P54868 508 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 TMED8Q6PL24 325 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-209ENST00000582653 CERS3Q8IU89 383 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 CLASRPQ8N2M8 674 aaKnown RBP24.93■■□□□ 1.58
SHMT1-209ENST00000582653 ANKRD13CQ8N6S4 541 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 GINM1Q9NU53 330 aa24.93■■□□□ 1.58
SHMT1-209ENST00000582653 BIN2Q9UBW5 565 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-209ENST00000582653 TNPO2O14787 897 aaKnown RBP24.92■■□□□ 1.58
SHMT1-209ENST00000582653 GJB1P08034 283 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 CCL5P13501 91 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 GCLCP48506 637 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-209ENST00000582653 JAG1P78504 1218 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 IRF5Q13568 498 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 FAM110CQ1W6H9 321 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 CRACR2BQ8N4Y2 399 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-209ENST00000582653 PXYLP1Q8TE99 480 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 DNAJC18Q9H819 358 aa24.92■■□□□ 1.58
SHMT1-209ENST00000582653 ADCY3O60266 1144 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 GJA8P48165 433 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms