RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 UBE2OQ9C0C9 1292 aaKnown RBP9.58□□□□□ -0.88
CCDC47-205ENST00000582331 AFG3L2Q9Y4W6 797 aa9.58□□□□□ -0.88
CCDC47-205ENST00000582331 IL16Q14005 1332 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 CUL9Q8IWT3 2517 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 ALPK3Q96L96 1907 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 PHF20L1A8MW92 1017 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 ALDH1L1O75891 902 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 PTPRAP18433 802 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 NFIAQ12857 509 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 LRRC24Q50LG9 513 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 FBXO22Q8NEZ5 403 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 SUCLG2Q96I99 432 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 C11orf49Q9H6J7 331 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 HMX1Q9NP08 348 aaPredicted RBP9.57□□□□□ -0.88
CCDC47-205ENST00000582331 USP40Q9NVE5 1235 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 FAM198AQ9UFP1 575 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 DAGLAQ9Y4D2 1042 aa9.57□□□□□ -0.88
CCDC47-205ENST00000582331 RPTORQ8N122 1335 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 AK9Q5TCS8 1911 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 CACNA1FO60840 1977 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 HMGCRP04035 888 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 IFIT1P09914 478 aaKnown RBP9.56□□□□□ -0.88
CCDC47-205ENST00000582331 SLC4A10Q6U841 1118 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 ZFPM1Q8IX07 1006 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 ANKRD13CQ8N6S4 541 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 KAZALD1Q96I82 304 aa9.56□□□□□ -0.88
CCDC47-205ENST00000582331 PRKRIP1Q9H875 184 aaPredicted RBP9.56□□□□□ -0.88
CCDC47-205ENST00000582331 LRRFIP2Q9Y608 721 aaKnown RBP9.56□□□□□ -0.88
CCDC47-205ENST00000582331 EXOSC9Q06265 439 aaKnown RBP9.55□□□□□ -0.88
CCDC47-205ENST00000582331 DIXDC1Q155Q3 683 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 FAM110CQ1W6H9 321 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 ZSCAN29Q8IWY8 852 aaPredicted RBP9.55□□□□□ -0.88
CCDC47-205ENST00000582331 VGLL2Q8N8G2 317 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 MFRPQ9BY79 579 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 SRCIN1Q9C0H9 1055 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 PNMA3Q9UL41 463 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 OGDHLQ9ULD0 1010 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 AGTPBP1Q9UPW5 1226 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 KIF16BQ96L93 1317 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 FANCIQ9NVI1 1328 aa9.55□□□□□ -0.88
CCDC47-205ENST00000582331 TRIM75PA6NK02 468 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 CTNND1O60716 968 aaKnown RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 ENTPD3O75355 529 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 LDHBP07195 334 aaKnown RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 NBPF7P0C2Y1 421 aaPredicted RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 FGFR2P21802 821 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 GCLCP48506 637 aaPredicted RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 RGS3P49796 1198 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 MAP3K10Q02779 954 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 TRIM32Q13049 653 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 PUM3Q15397 648 aaKnown RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 RABL6Q3YEC7 729 aaPredicted RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 FAM109BQ6ICB4 259 aaPredicted RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 BICC1Q9H694 974 aaKnown RBP9.54□□□□□ -0.88
CCDC47-205ENST00000582331 PLSCR2Q9NRY7 297 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 GJD2Q9UKL4 321 aa9.54□□□□□ -0.88
CCDC47-205ENST00000582331 ATRNL1Q5VV63 1379 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 SLC5A1P13866 664 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 PRDX5P30044 214 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 TREML2Q5T2D2 321 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 LPIN2Q92539 896 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 GUCD1Q96NT3 240 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 IDI2Q9BXS1 227 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 UTYO14607 1347 aa9.53□□□□□ -0.88
CCDC47-205ENST00000582331 MDM2Q00987 491 aaPredicted RBP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 PABPC4Q13310 644 aaKnown RBP eCLIP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 DDX60LQ5H9U9 1706 aaKnown RBP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 SH3BP5LQ7L8J4 393 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 CCDC84Q86UT8 332 aaPredicted RBP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 ANKRD44Q8N8A2 993 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 PROCA1Q8NCQ7 364 aaPredicted RBP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 KLHDC4Q8TBB5 520 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 FAM161BQ96MY7 647 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 PRDM6Q9NQX0 595 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 GNL3LQ9NVN8 582 aaKnown RBP9.52□□□□□ -0.89
CCDC47-205ENST00000582331 PFASO15067 1338 aa9.52□□□□□ -0.89
CCDC47-205ENST00000582331 DOCK3Q8IZD9 2030 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 LAMA2P24043 3122 aaKnown RBP9.51□□□□□ -0.89
CCDC47-205ENST00000582331 DDTLA6NHG4 134 aaPredicted RBP9.51□□□□□ -0.89
CCDC47-205ENST00000582331 SLURP2P0DP57 97 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 COL6A1P12109 1028 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 CYP2B6P20813 491 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 SPP2Q13103 211 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 MAP3K21Q5TCX8 1036 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 WDR63Q8IWG1 891 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 TRIB2Q92519 343 aa9.51□□□□□ -0.89
CCDC47-205ENST00000582331 LBHD1Q9BQE6 289 aaPredicted RBP9.51□□□□□ -0.89
CCDC47-205ENST00000582331 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.51□□□□□ -0.89
CCDC47-205ENST00000582331 EYA2O00167 538 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 TBC1D12O60347 775 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 LRRC26Q2I0M4 334 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 ZNF697Q5TEC3 545 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 TRMT44Q8IYL2 757 aaKnown RBP9.5□□□□□ -0.89
CCDC47-205ENST00000582331 ZNF280CQ8ND82 737 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 NUDT12Q9BQG2 462 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 TBC1D2Q9BYX2 928 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 ASCC2Q9H1I8 757 aaPredicted RBP9.5□□□□□ -0.89
CCDC47-205ENST00000582331 MORF4L1Q9UBU8 362 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 DENND2AQ9ULE3 1009 aa9.5□□□□□ -0.89
CCDC47-205ENST00000582331 SALL1Q9NSC2 1324 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms