RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ZSWIM5Q9P217 1185 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 PPP1R1BQ9UD71 204 aaPredicted RBP12.37□□□□□ -0.43
SS18-217ENST00000580958 ANGEL1Q9UNK9 670 aaKnown RBP12.37□□□□□ -0.43
SS18-217ENST00000580958 COL4A5P29400 1685 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 USP17L3A6NCW0 530 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 USP17L4A6NCW7 530 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 GOLGA8BA8MQT2 603 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 IFIT3O14879 490 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 JAK2O60674 1132 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 BAG4O95429 457 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 SYT1P21579 422 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 SCNN1DP51172 638 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 RHBDL3P58872 404 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 FKBP1AP62942 108 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 SLC4A8Q2Y0W8 1093 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 DALRD3Q5D0E6 543 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 STRIP1Q5VSL9 837 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 USP17L1Q7RTZ2 530 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 RAB11FIP4Q86YS3 637 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 IGDCC4Q8TDY8 1250 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 LY9Q9HBG7 655 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 SENP2Q9HC62 589 aa12.36□□□□□ -0.43
SS18-217ENST00000580958 NCOA5Q9HCD5 579 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 MKRN1Q9UHC7 482 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 SAP30BPQ9UHR5 308 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.36□□□□□ -0.43
SS18-217ENST00000580958 WDR33Q9C0J8 1336 aaKnown RBP12.36□□□□□ -0.43
SS18-217ENST00000580958 YDJCA8MPS7 323 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 STX6O43752 255 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 PRDM1O75626 825 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 SLC3A2P08195 630 aaKnown RBP12.35□□□□□ -0.43
SS18-217ENST00000580958 FGRP09769 529 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 PCP11498 1178 aaKnown RBP12.35□□□□□ -0.43
SS18-217ENST00000580958 SOGA3Q5TF21 947 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 C12orf60Q5U649 245 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 NFXL1Q6ZNB6 911 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 NSUN7Q8NE18 718 aaKnown RBP12.35□□□□□ -0.43
SS18-217ENST00000580958 SMARCC2Q8TAQ2 1214 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 ESR2Q92731 530 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 ZKSCAN3Q9BRR0 538 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 LLPHQ9BRT6 129 aaKnown RBP12.35□□□□□ -0.43
SS18-217ENST00000580958 ZNF277Q9NRM2 450 aaPredicted RBP12.35□□□□□ -0.43
SS18-217ENST00000580958 HPS5Q9UPZ3 1129 aa12.35□□□□□ -0.43
SS18-217ENST00000580958 SIPA1L1O43166 1804 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 ROBO3Q96MS0 1386 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 ORC4O43929 436 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 RANBP6O60518 1105 aaKnown RBP12.34□□□□□ -0.43
SS18-217ENST00000580958 CTDNEP1O95476 244 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 POLR3DP05423 398 aaPredicted RBP12.34□□□□□ -0.43
SS18-217ENST00000580958 LIFRP42702 1097 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 PTGER2P43116 358 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 CRKP46108 304 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 WTAPQ15007 396 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 SART3Q15020 963 aaKnown RBP12.34□□□□□ -0.43
SS18-217ENST00000580958 HHIPL2Q6UWX4 724 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 CLEC17AQ6ZS10 378 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 KIAA0825Q8IV33 1275 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 AMOTL1Q8IY63 956 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 LARGE2Q8N3Y3 721 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 TEKT1Q969V4 418 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 DDX11Q96FC9 970 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 MTA3Q9BTC8 594 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 MTMR6Q9Y217 621 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 FLT1P17948 1338 aa12.34□□□□□ -0.43
SS18-217ENST00000580958 ERICH2A1L162 156 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 PTPDC1A2A3K4 754 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 VPS37CA5D8V6 355 aaPredicted RBP12.33□□□□□ -0.44
SS18-217ENST00000580958 CCDC69A6NI79 296 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 DDX11L8A8MPP1 907 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 ZSCAN22P10073 491 aaPredicted RBP12.33□□□□□ -0.44
SS18-217ENST00000580958 PDE4BQ07343 736 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 LARP1BQ659C4 914 aaKnown RBP12.33□□□□□ -0.44
SS18-217ENST00000580958 SGMS1Q86VZ5 419 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 CHMP4CQ96CF2 233 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 DYNLL2Q96FJ2 89 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 UBAC1Q9BSL1 405 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 USP40Q9NVE5 1235 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 CD2APQ9Y5K6 639 aa12.33□□□□□ -0.44
SS18-217ENST00000580958 GOLGA8AA7E2F4 631 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 ZBTB43O43298 467 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 F13A1P00488 732 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 RXRAP19793 462 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 PDCP20941 246 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 IARSP41252 1262 aaKnown RBP12.32□□□□□ -0.44
SS18-217ENST00000580958 METAP2P50579 478 aaKnown RBP eCLIP12.32□□□□□ -0.44
SS18-217ENST00000580958 HMGN5P82970 282 aaKnown RBP12.32□□□□□ -0.44
SS18-217ENST00000580958 PICALMQ13492 652 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 SEC23AQ15436 765 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 FAM47AQ5JRC9 791 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 CDC42EP5Q6NZY7 148 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 APOA5Q6Q788 366 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 MICU3Q86XE3 530 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 CHAMP1Q96JM3 812 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 MYL10Q9BUA6 226 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 PCDHAC2Q9Y5I4 1007 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 DICER1Q9UPY3 1922 aaKnown RBP12.32□□□□□ -0.44
SS18-217ENST00000580958 TNKSO95271 1327 aa12.32□□□□□ -0.44
SS18-217ENST00000580958 MYH4Q9Y623 1939 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 WDHD1O75717 1129 aaPredicted RBP12.31□□□□□ -0.44
SS18-217ENST00000580958 RAD17O75943 681 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms