RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 PRDX5P30044 214 aa13.4□□□□□ -0.26
TOP3A-210ENST00000580713 GCLCP48506 637 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-210ENST00000580713 PUM3Q15397 648 aaKnown RBP13.4□□□□□ -0.26
TOP3A-210ENST00000580713 CCDC27Q2M243 656 aa13.4□□□□□ -0.26
TOP3A-210ENST00000580713 ZNF697Q5TEC3 545 aa13.4□□□□□ -0.26
TOP3A-210ENST00000580713 VGLL2Q8N8G2 317 aa13.4□□□□□ -0.26
TOP3A-210ENST00000580713 KAZALD1Q96I82 304 aa13.4□□□□□ -0.26
TOP3A-210ENST00000580713 LBHD1Q9BQE6 289 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-210ENST00000580713 BICC1Q9H694 974 aaKnown RBP13.4□□□□□ -0.26
TOP3A-210ENST00000580713 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-210ENST00000580713 PFASO15067 1338 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 IL16Q14005 1332 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 NBPF7P0C2Y1 421 aaPredicted RBP13.39□□□□□ -0.27
TOP3A-210ENST00000580713 SLURP2P0DP57 97 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 EXOSC9Q06265 439 aaKnown RBP13.39□□□□□ -0.27
TOP3A-210ENST00000580713 KLHDC4Q8TBB5 520 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 GJD2Q9UKL4 321 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 CIZ1Q9ULV3 898 aaPredicted RBP13.39□□□□□ -0.27
TOP3A-210ENST00000580713 DDX60LQ5H9U9 1706 aaKnown RBP13.39□□□□□ -0.27
TOP3A-210ENST00000580713 KIF16BQ96L93 1317 aa13.39□□□□□ -0.27
TOP3A-210ENST00000580713 CACNA1FO60840 1977 aa13.38□□□□□ -0.27
TOP3A-210ENST00000580713 ENTPD3O75355 529 aa13.38□□□□□ -0.27
TOP3A-210ENST00000580713 PABPC4Q13310 644 aaKnown RBP eCLIP13.38□□□□□ -0.27
TOP3A-210ENST00000580713 LRRC26Q2I0M4 334 aa13.38□□□□□ -0.27
TOP3A-210ENST00000580713 MAFAQ8NHW3 353 aaPredicted RBP13.38□□□□□ -0.27
TOP3A-210ENST00000580713 TRIB2Q92519 343 aa13.38□□□□□ -0.27
TOP3A-210ENST00000580713 ATRNL1Q5VV63 1379 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 FGFR2P21802 821 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 SPP2Q13103 211 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 PICALMQ13492 652 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 GSE1Q14687 1217 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 SH3BP5LQ7L8J4 393 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 PROCA1Q8NCQ7 364 aaPredicted RBP13.37□□□□□ -0.27
TOP3A-210ENST00000580713 LPIN2Q92539 896 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 IDI2Q9BXS1 227 aa13.37□□□□□ -0.27
TOP3A-210ENST00000580713 GNL3LQ9NVN8 582 aaKnown RBP13.37□□□□□ -0.27
TOP3A-210ENST00000580713 DDTLA6NHG4 134 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-210ENST00000580713 NUBP1P53384 320 aa13.36□□□□□ -0.27
TOP3A-210ENST00000580713 HMGCS2P54868 508 aa13.36□□□□□ -0.27
TOP3A-210ENST00000580713 RABL6Q3YEC7 729 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-210ENST00000580713 ANKRD44Q8N8A2 993 aa13.36□□□□□ -0.27
TOP3A-210ENST00000580713 CDX2Q99626 313 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-210ENST00000580713 NUDT12Q9BQG2 462 aa13.36□□□□□ -0.27
TOP3A-210ENST00000580713 ASCC2Q9H1I8 757 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-210ENST00000580713 COL6A1P12109 1028 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 ZKSCAN1P17029 563 aaPredicted RBP13.35□□□□□ -0.27
TOP3A-210ENST00000580713 IRX3P78415 501 aaPredicted RBP13.35□□□□□ -0.27
TOP3A-210ENST00000580713 MAP3K10Q02779 954 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 MAP3K21Q5TCX8 1036 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 CCAR1Q8IX12 1150 aaKnown RBP13.35□□□□□ -0.27
TOP3A-210ENST00000580713 ZNF280CQ8ND82 737 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.35□□□□□ -0.27
TOP3A-210ENST00000580713 PRKAG2Q9UGJ0 569 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
TOP3A-210ENST00000580713 FAM196BA6NMK8 535 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 CACNB2Q08289 660 aaPredicted RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 PDE3AQ14432 1141 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 DZIP1Q86YF9 867 aaKnown RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 TRMT44Q8IYL2 757 aaKnown RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 SOCS4Q8WXH5 440 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 SYMPKQ92797 1274 aaKnown RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 SENP6Q9GZR1 1112 aaPredicted RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 DDX4Q9NQI0 724 aaKnown RBP13.34□□□□□ -0.27
TOP3A-210ENST00000580713 DENND2AQ9ULE3 1009 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 PTPRFP10586 1907 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 DOCK2Q92608 1830 aa13.34□□□□□ -0.27
TOP3A-210ENST00000580713 EYA2O00167 538 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 COL9A1P20849 921 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 CCND3P30281 292 aaPredicted RBP13.33□□□□□ -0.28
TOP3A-210ENST00000580713 SLF2Q8IX21 1173 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 MYLIPQ8WY64 445 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 OSBPL5Q9H0X9 879 aaPredicted RBP13.33□□□□□ -0.28
TOP3A-210ENST00000580713 SEMA6BQ9H3T3 888 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 CWC22Q9HCG8 908 aaKnown RBP13.33□□□□□ -0.28
TOP3A-210ENST00000580713 MORF4L1Q9UBU8 362 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 DOCK1Q14185 1865 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 UTYO14607 1347 aa13.33□□□□□ -0.28
TOP3A-210ENST00000580713 USP17L5A8MUK1 530 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 XRCC5P13010 732 aaKnown RBP13.32□□□□□ -0.28
TOP3A-210ENST00000580713 BTDP43251 543 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 ATN1P54259 1190 aaPredicted RBP13.32□□□□□ -0.28
TOP3A-210ENST00000580713 ATP2B3Q16720 1220 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 LHX8Q68G74 356 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 ZGPATQ8N5A5 531 aaKnown RBP13.32□□□□□ -0.28
TOP3A-210ENST00000580713 ZNF579Q8NAF0 562 aaKnown RBP13.32□□□□□ -0.28
TOP3A-210ENST00000580713 GPRC5AQ8NFJ5 357 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 TBC1D2Q9BYX2 928 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 ABCF2Q9UG63 623 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 MYH13Q9UKX3 1938 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 SALL1Q9NSC2 1324 aa13.32□□□□□ -0.28
TOP3A-210ENST00000580713 TBC1D12O60347 775 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 PEX10O60683 326 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 RGS2P41220 211 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 PHKA1P46020 1223 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 CCL14Q16627 93 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 WDR63Q8IWG1 891 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
TOP3A-210ENST00000580713 P2RX7Q99572 595 aaKnown RBP13.31□□□□□ -0.28
TOP3A-210ENST00000580713 AS3MTQ9HBK9 375 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms