RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 ATAD5Q96QE3 1844 aa17.74■□□□□ 0.43
SMARCE1-216ENST00000580419 PICALMQ13492 652 aa17.73■□□□□ 0.43
SMARCE1-216ENST00000580419 SLC9C1Q4G0N8 1177 aa17.73■□□□□ 0.43
SMARCE1-216ENST00000580419 TEX11Q8IYF3 940 aa17.73■□□□□ 0.43
SMARCE1-216ENST00000580419 EAF2Q96CJ1 260 aaPredicted RBP17.73■□□□□ 0.43
SMARCE1-216ENST00000580419 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.73■□□□□ 0.432e-6■■■■■ 27.2
SMARCE1-216ENST00000580419 LOC285556D6RIA3 1793 aa17.73■□□□□ 0.43
SMARCE1-216ENST00000580419 CAP2P40123 477 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 ZBTB40Q9NUA8 1239 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 SRRDQ9UH36 339 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 TAOK2Q9UL54 1235 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 AGTPBP1Q9UPW5 1226 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 PTCH2Q9Y6C5 1203 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 SIPA1L1O43166 1804 aa17.72■□□□□ 0.43
SMARCE1-216ENST00000580419 HMMRO75330 724 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 SH3D19Q5HYK7 790 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 WDR18Q9BV38 432 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 TMEM106CQ9BVX2 250 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 C1orf115Q9H7X2 142 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 PNMA3Q9UL41 463 aa17.71■□□□□ 0.43
SMARCE1-216ENST00000580419 ASNSP08243 561 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 ZAP70P43403 619 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 PSMC4P43686 418 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 ZNF280CQ8ND82 737 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 SH3RF3Q8TEJ3 882 aaPredicted RBP17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 TRIM47Q96LD4 638 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 DOCK3Q8IZD9 2030 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 CEP290O15078 2479 aa17.7■□□□□ 0.42
SMARCE1-216ENST00000580419 MYH1P12882 1939 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 USP17L5A8MUK1 530 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 RAB11FIP3O75154 756 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 SLC34A2O95436 690 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 PABPC4Q13310 644 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 PDE3AQ14432 1141 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 TTF1Q15361 905 aaPredicted RBP17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 PANK1Q8TE04 598 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 KIF1BPQ96EK5 621 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 AS3MTQ9HBK9 375 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 SNRKQ9NRH2 765 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 AATFQ9NY61 560 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 CPA4Q9UI42 421 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 FLT1P17948 1338 aa17.69■□□□□ 0.42
SMARCE1-216ENST00000580419 POTEFA5A3E0 1075 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 GCLCP48506 637 aaPredicted RBP17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 FCGRTP55899 365 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 MAP3K12Q12852 859 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 RHPN1Q8TCX5 695 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 EHD4Q9H223 541 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 ZSWIM8A7E2V4 1837 aa17.68■□□□□ 0.42
SMARCE1-216ENST00000580419 C19orf81C9J6K1 198 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 OSBPP22059 807 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 IRF5Q13568 498 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 FAM110CQ1W6H9 321 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 ADGRA1Q86SQ6 560 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 CLASRPQ8N2M8 674 aaKnown RBP17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 ARHGAP39Q9C0H5 1083 aa17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 CCDC8Q9H0W5 538 aaPredicted RBP17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 PIH1D3Q9NQM4 214 aaKnown RBP17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 TLR7Q9NYK1 1049 aaKnown RBP17.67■□□□□ 0.42
SMARCE1-216ENST00000580419 TRIM75PA6NK02 468 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 CYP2C8P10632 490 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 CTGFP29279 349 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 HOXA7P31268 230 aaPredicted RBP17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 AACSQ86V21 672 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 NKX2-3Q8TAU0 364 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 PXYLP1Q8TE99 480 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 TGFBRAP1Q8WUH2 860 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 RCAN3Q9UKA8 241 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 EXOC6BQ9Y2D4 811 aa17.66■□□□□ 0.42
SMARCE1-216ENST00000580419 FMNL1O95466 1100 aaPredicted RBP17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 HLA-DOAP06340 250 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 CYP7A1P22680 504 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 GRK4P32298 578 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 SPP2Q13103 211 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 GADL1Q6ZQY3 521 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 SLAIN1Q8ND83 568 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 SMCR8Q8TEV9 937 aaPredicted RBP17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 GCC1Q96CN9 775 aa17.65■□□□□ 0.42
SMARCE1-216ENST00000580419 IDH1O75874 414 aaKnown RBP17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 BACE1P56817 501 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 TATDN1Q6P1N9 297 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 SIRT2Q8IXJ6 389 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 RAET1EQ8TD07 263 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 DNAJC18Q9H819 358 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 MYPNQ86TC9 1320 aa17.64■□□□□ 0.41
SMARCE1-216ENST00000580419 RRP1BQ14684 758 aaKnown RBP17.63■□□□□ 0.41
SMARCE1-216ENST00000580419 TTC6Q86TZ1 520 aa17.63■□□□□ 0.41
SMARCE1-216ENST00000580419 MAPKAPK5Q8IW41 473 aa17.63■□□□□ 0.41
SMARCE1-216ENST00000580419 GTF3C2Q8WUA4 911 aaPredicted RBP17.63■□□□□ 0.41
SMARCE1-216ENST00000580419 MORF4L1Q9UBU8 362 aa17.63■□□□□ 0.41
SMARCE1-216ENST00000580419 DDX60LQ5H9U9 1706 aaKnown RBP17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 FAM196BA6NMK8 535 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 GJB1P08034 283 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 SLURP2P0DP57 97 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 EN2P19622 333 aaPredicted RBP17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 CRACR2BQ8N4Y2 399 aaPredicted RBP17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 MAGEB6Q8N7X4 407 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 RIOK1Q9BRS2 568 aaKnown RBP17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 TRIM34Q9BYJ4 488 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms