RNA–Protein interactions for RNA: ENST00000579605.5

CDK5RAP3-213, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 560 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-213ENST00000579605 NBPF7P0C2Y1 421 aaPredicted RBP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 XRCC5P13010 732 aaKnown RBP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 FGFR2P21802 821 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 PDE3AQ14432 1141 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 CCAR1Q8IX12 1150 aaKnown RBP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 ZNF280CQ8ND82 737 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 IDI2Q9BXS1 227 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 SRCIN1Q9C0H9 1055 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 DDX4Q9NQI0 724 aaKnown RBP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 PRDM5Q9NQX1 630 aaPredicted RBP16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 ATP11BQ9Y2G3 1177 aa16.53■□□□□ 0.24
CDK5RAP3-213ENST00000579605 ALDH1L1O75891 902 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 SLC5A1P13866 664 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 RTP1P59025 263 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 IRX3P78415 501 aaPredicted RBP16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 TRMT44Q8IYL2 757 aaKnown RBP16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 USP38Q8NB14 1042 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 SOCS4Q8WXH5 440 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 P2RX7Q99572 595 aaKnown RBP16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 MORF4L1Q9UBU8 362 aa16.52■□□□□ 0.24
CDK5RAP3-213ENST00000579605 CNGA1P29973 690 aa16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 SMAD3P84022 425 aaKnown RBP16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 WWC1Q8IX03 1113 aa16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 GPRC5AQ8NFJ5 357 aa16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 PPM1EQ8WY54 764 aa16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 TXNRD2Q9NNW7 524 aa16.51■□□□□ 0.23
CDK5RAP3-213ENST00000579605 RGS2P41220 211 aa16.5■□□□□ 0.23
CDK5RAP3-213ENST00000579605 LPIN2Q92539 896 aa16.5■□□□□ 0.23
CDK5RAP3-213ENST00000579605 BADQ92934 168 aa16.5■□□□□ 0.23
CDK5RAP3-213ENST00000579605 CWC22Q9HCG8 908 aaKnown RBP16.5■□□□□ 0.23
CDK5RAP3-213ENST00000579605 KIF16BQ96L93 1317 aa16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 EXOSC9Q06265 439 aaKnown RBP16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 Q3C1V9 767 aa16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 ANKRD44Q8N8A2 993 aa16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 TTC28Q96AY4 2481 aa16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 PAGR1Q9BTK6 254 aa16.49■□□□□ 0.23
CDK5RAP3-213ENST00000579605 FANCIQ9NVI1 1328 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 USP17L5A8MUK1 530 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MAPK4P31152 587 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 GRIN2CQ14957 1233 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 RABL6Q3YEC7 729 aaPredicted RBP16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 USP6NLQ92738 828 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 PORCNQ9H237 461 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 PRKRIP1Q9H875 184 aaPredicted RBP16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 GNL3LQ9NVN8 582 aaKnown RBP16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 NDUFB9Q9Y6M9 179 aa16.48■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MYCNP04198 464 aaPredicted RBP16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 BTDP43251 543 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 HERVK_113P62684 666 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MAP3K12Q12852 859 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 RRP1BQ14684 758 aaKnown RBP16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MFSD14CQ5VZR4 134 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 GPR142Q7Z601 462 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 PLEKHH3Q7Z736 793 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 DZIP1Q86YF9 867 aaKnown RBP16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 OSBPL5Q9H0X9 879 aaPredicted RBP16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 TMOD4Q9NZQ9 345 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 RBPJLQ9UBG7 517 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 ABCF2Q9UG63 623 aa16.47■□□□□ 0.23
CDK5RAP3-213ENST00000579605 TBC1D12O60347 775 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 CAP2P40123 477 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MTMR2Q13614 643 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 SH3D19Q5HYK7 790 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MORN1Q5T089 497 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 GJC2Q5T442 439 aaPredicted RBP16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 APBA2Q99767 749 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 AS3MTQ9HBK9 375 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 DDX20Q9UHI6 824 aaKnown RBP16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 DENND2AQ9ULE3 1009 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 SALL2Q9Y467 1007 aaPredicted RBP16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 MUC3AQ02505 3323 aa16.46■□□□□ 0.23
CDK5RAP3-213ENST00000579605 CDH23Q9H251 3354 aa16.46■□□□□ 0.22
CDK5RAP3-213ENST00000579605 GAKO14976 1311 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 EYA2O00167 538 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 ERVK-9P63128 1117 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 ERVK-24P63145 666 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 CCDC27Q2M243 656 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 WDR78Q5VTH9 848 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 SLC39A5Q6ZMH5 540 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 SH3RF1Q7Z6J0 888 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 LPAR1Q92633 364 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 EDC3Q96F86 508 aaKnown RBP16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 RNPC3Q96LT9 517 aaKnown RBP16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 TBC1D2Q9BYX2 928 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 FLRT1Q9NZU1 646 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 PLXNB2O15031 1838 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 IL16Q14005 1332 aa16.45■□□□□ 0.22
CDK5RAP3-213ENST00000579605 RFX7Q2KHR2 1363 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 DNM1LO00429 736 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 PHKA1P46020 1223 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 MAP2K5Q13163 448 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 TRIM60Q495X7 471 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 NCBP3Q53F19 620 aaKnown RBP16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 SLF2Q8IX21 1173 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 PTPRFP10586 1907 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 DNAH12Q6ZR08 3092 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 DOCK1Q14185 1865 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 SALL1Q9NSC2 1324 aa16.44■□□□□ 0.22
CDK5RAP3-213ENST00000579605 PHIPQ8WWQ0 1821 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms