RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 F13BP05160 661 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 EIF4A3P38919 411 aaKnown RBP8.95□□□□□ -0.98
NUP88-213ENST00000576862 ZNF394Q53GI3 561 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 ZAR1Q86SH2 424 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 ZDHHC13Q8IUH4 622 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 PSMG3-AS1Q96PY0 264 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 WNT10AQ9GZT5 417 aa8.95□□□□□ -0.98
NUP88-213ENST00000576862 RBM25P49756 843 aaKnown RBP8.94□□□□□ -0.98
NUP88-213ENST00000576862 HDLBPQ00341 1268 aaKnown RBP8.94□□□□□ -0.98
NUP88-213ENST00000576862 SNAP47Q5SQN1 464 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 FAM196AQ6ZSG2 479 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 FBXL6Q8N531 539 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 FBXO27Q8NI29 283 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 SHKBP1Q8TBC3 707 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 TBC1D32Q96NH3 1257 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 FBRSQ9HAH7 460 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 PICK1Q9NRD5 415 aa8.94□□□□□ -0.98
NUP88-213ENST00000576862 PRR19A6NJB7 356 aa8.93□□□□□ -0.98
NUP88-213ENST00000576862 RACK1P63244 317 aaKnown RBP8.93□□□□□ -0.98
NUP88-213ENST00000576862 CDK5R2Q13319 367 aa8.93□□□□□ -0.98
NUP88-213ENST00000576862 USP48Q86UV5 1035 aa8.93□□□□□ -0.98
NUP88-213ENST00000576862 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.93□□□□□ -0.98
NUP88-213ENST00000576862 ZNF296Q8WUU4 475 aaPredicted RBP8.93□□□□□ -0.98
NUP88-213ENST00000576862 PCDHGB7Q9Y5F8 929 aa8.93□□□□□ -0.98
NUP88-213ENST00000576862 TACC3Q9Y6A5 838 aa8.93□□□□□ -0.98
NUP88-213ENST00000576862 WDR64B1ANS9 1081 aa8.92□□□□□ -0.98
NUP88-213ENST00000576862 GRK4P32298 578 aa8.92□□□□□ -0.98
NUP88-213ENST00000576862 ZNF507Q8TCN5 953 aa8.92□□□□□ -0.98
NUP88-213ENST00000576862 SSU72Q9NP77 194 aaKnown RBP8.92□□□□□ -0.98
NUP88-213ENST00000576862 SUPT16HQ9Y5B9 1047 aaKnown RBP8.92□□□□□ -0.98
NUP88-213ENST00000576862 FAM170BA6NMN3 283 aa8.91□□□□□ -0.98
NUP88-213ENST00000576862 CRKP46108 304 aa8.91□□□□□ -0.98
NUP88-213ENST00000576862 SLBPQ14493 270 aaKnown RBP eCLIP8.91□□□□□ -0.98
NUP88-213ENST00000576862 NKG7Q16617 165 aa8.91□□□□□ -0.98
NUP88-213ENST00000576862 C9orf131Q5VYM1 1079 aa8.91□□□□□ -0.98
NUP88-213ENST00000576862 DDX41Q9UJV9 622 aaKnown RBP8.91□□□□□ -0.98
NUP88-213ENST00000576862 POLR3KQ9Y2Y1 108 aaPredicted RBP8.91□□□□□ -0.98
NUP88-213ENST00000576862 CORINQ9Y5Q5 1042 aa8.91□□□□□ -0.98
NUP88-213ENST00000576862 BPNT1O95861 308 aa8.9□□□□□ -0.98
NUP88-213ENST00000576862 TGFB1P01137 390 aa8.9□□□□□ -0.98
NUP88-213ENST00000576862 ETF1P62495 437 aaKnown RBP8.9□□□□□ -0.98
NUP88-213ENST00000576862 MPP2Q14168 576 aa8.9□□□□□ -0.98
NUP88-213ENST00000576862 LRRC3Q9BY71 257 aa8.9□□□□□ -0.98
NUP88-213ENST00000576862 RNF112Q9ULX5 631 aa8.9□□□□□ -0.98
NUP88-213ENST00000576862 TLR3O15455 904 aaKnown RBP8.89□□□□□ -0.99
NUP88-213ENST00000576862 OGFOD3Q6PK18 319 aa8.89□□□□□ -0.99
NUP88-213ENST00000576862 CDC37L1Q7L3B6 337 aa8.89□□□□□ -0.99
NUP88-213ENST00000576862 REC114Q7Z4M0 266 aa8.89□□□□□ -0.99
NUP88-213ENST00000576862 KCT2Q8NC54 265 aa8.89□□□□□ -0.99
NUP88-213ENST00000576862 EAF1Q96JC9 268 aaPredicted RBP8.89□□□□□ -0.99
NUP88-213ENST00000576862 UBP1Q9NZI7 540 aa8.89□□□□□ -0.99
NUP88-213ENST00000576862 ROBO2Q9HCK4 1378 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 PRR36Q9H6K5 1346 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 LEFTY1O75610 366 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 FAM87AP0C7U9 286 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 CAP2P40123 477 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 ZNF765Q7L2R6 523 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 NT5DC4Q86YG4 428 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 HID1Q8IV36 788 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 SPON2Q9BUD6 331 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 DUSP23Q9BVJ7 150 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 TJP2Q9UDY2 1190 aa8.88□□□□□ -0.99
NUP88-213ENST00000576862 PGRP06401 933 aa8.87□□□□□ -0.99
NUP88-213ENST00000576862 ARMCX6Q7L4S7 300 aa8.87□□□□□ -0.99
NUP88-213ENST00000576862 KIAA0825Q8IV33 1275 aa8.87□□□□□ -0.99
NUP88-213ENST00000576862 NT5C1AQ9BXI3 368 aa8.87□□□□□ -0.99
NUP88-213ENST00000576862 ATG3Q9NT62 314 aa8.87□□□□□ -0.99
NUP88-213ENST00000576862 GRIN3BO60391 1043 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 LRIG2O94898 1065 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 PDE4BQ07343 736 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 RAD51AP2Q09MP3 1159 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 ZMYM1Q5SVZ6 1142 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 DIEXFQ68CQ4 756 aaKnown RBP8.86□□□□□ -0.99
NUP88-213ENST00000576862 TOP6BLQ8N6T0 577 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 ACSF2Q96CM8 615 aaPredicted RBP8.86□□□□□ -0.99
NUP88-213ENST00000576862 OSBPL1AQ9BXW6 950 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 ADAM30Q9UKF2 790 aa8.86□□□□□ -0.99
NUP88-213ENST00000576862 HOXA10P31260 410 aaPredicted RBP8.85□□□□□ -0.99
NUP88-213ENST00000576862 CPSF6Q16630 551 aaKnown RBP eCLIP8.85□□□□□ -0.99
NUP88-213ENST00000576862 CWF19L2Q2TBE0 894 aaKnown RBP8.85□□□□□ -0.99
NUP88-213ENST00000576862 MRPL41Q8IXM3 137 aaKnown RBP8.85□□□□□ -0.99
NUP88-213ENST00000576862 GIMAP7Q8NHV1 300 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 TMEM87BQ96K49 555 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 METTL22Q9BUU2 404 aaPredicted RBP8.85□□□□□ -0.99
NUP88-213ENST00000576862 FOXQ1Q9C009 403 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 BRMS1Q9HCU9 246 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 PRDM10Q9NQV6 1147 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 PIM2Q9P1W9 311 aa8.85□□□□□ -0.99
NUP88-213ENST00000576862 MED26O95402 600 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 CST3P01034 146 aaPredicted RBP8.84□□□□□ -0.99
NUP88-213ENST00000576862 PLCG1P19174 1290 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 CYP27A1Q02318 531 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 APOBRQ0VD83 1088 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 TMEM201Q5SNT2 666 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 PRAMEF13Q5VWM6 474 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 FAM214BQ7L5A3 538 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 MCATQ8IVS2 390 aaKnown RBP8.84□□□□□ -0.99
NUP88-213ENST00000576862 SLITRK4Q8IW52 837 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 ZNF654Q8IZM8 581 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 REV1Q9UBZ9 1251 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms