RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PI4KAP1Q8N8J0 262 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 PBX4Q9BYU1 374 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 ASCC2Q9H1I8 757 aaPredicted RBP20.73■□□□□ 0.91
VPS53-218ENST00000575207 SUGT1Q9Y2Z0 365 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 MAST3O60307 1309 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 USP34Q70CQ2 3546 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 ZDBF2Q9HCK1 2354 aa20.72■□□□□ 0.91
VPS53-218ENST00000575207 PI4K2BG5E9Z4 385 aa20.72■□□□□ 0.91
VPS53-218ENST00000575207 RGS2P41220 211 aa20.72■□□□□ 0.91
VPS53-218ENST00000575207 MAP3K10Q02779 954 aa20.72■□□□□ 0.91
VPS53-218ENST00000575207 PABPC4Q13310 644 aaKnown RBP eCLIP20.72■□□□□ 0.91
VPS53-218ENST00000575207 IFIT5Q13325 482 aaKnown RBP20.72■□□□□ 0.91
VPS53-218ENST00000575207 ERC2O15083 957 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 PLIN1O60240 522 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 CTNND1O60716 968 aaKnown RBP20.71■□□□□ 0.91
VPS53-218ENST00000575207 MORN1Q5T089 497 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 APBA2Q99767 749 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 FAM198AQ9UFP1 575 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 TACC3Q9Y6A5 838 aa20.71■□□□□ 0.91
VPS53-218ENST00000575207 PBX2P40425 430 aa20.7■□□□□ 0.9
VPS53-218ENST00000575207 CHAF1AQ13111 956 aaPredicted RBP20.7■□□□□ 0.9
VPS53-218ENST00000575207 GCKRQ14397 625 aa20.7■□□□□ 0.9
VPS53-218ENST00000575207 KCNH6Q9H252 994 aa20.7■□□□□ 0.9
VPS53-218ENST00000575207 MAPK4P31152 587 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 FPGSQ05932 587 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 CDC42EP5Q6NZY7 148 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 FBXO33Q7Z6M2 555 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 ARRDC4Q8NCT1 418 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 UTYO14607 1347 aa20.69■□□□□ 0.9
VPS53-218ENST00000575207 TLL1O43897 1013 aa20.68■□□□□ 0.9
VPS53-218ENST00000575207 GJC2Q5T442 439 aaPredicted RBP20.68■□□□□ 0.9
VPS53-218ENST00000575207 IQSEC3Q9UPP2 1182 aaPredicted RBP20.68■□□□□ 0.9
VPS53-218ENST00000575207 LRRFIP2Q9Y608 721 aaKnown RBP20.68■□□□□ 0.9
VPS53-218ENST00000575207 LOC285556D6RIA3 1793 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 KIAA0355O15063 1070 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 TLE2Q04725 743 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 MFSD14CQ5VZR4 134 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 LDHAL6AQ6ZMR3 332 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 CCDC84Q86UT8 332 aaPredicted RBP20.67■□□□□ 0.9
VPS53-218ENST00000575207 ZFPM1Q8IX07 1006 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 GPRC5AQ8NFJ5 357 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 HERVK_113Q902F9 699 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.67■□□□□ 0.9
VPS53-218ENST00000575207 TRIM35Q9UPQ4 493 aa20.67■□□□□ 0.9
VPS53-218ENST00000575207 MYBBP1AQ9BQG0 1328 aaKnown RBP20.67■□□□□ 0.9
VPS53-218ENST00000575207 TXNRD2Q9NNW7 524 aa20.66■□□□□ 0.9
VPS53-218ENST00000575207 MBIPQ9NS73 344 aa20.66■□□□□ 0.9
VPS53-218ENST00000575207 DOCK1Q14185 1865 aa20.66■□□□□ 0.9
VPS53-218ENST00000575207 PLXNA1Q9UIW2 1896 aa20.66■□□□□ 0.9
VPS53-218ENST00000575207 TRANK1O15050 2925 aa20.66■□□□□ 0.9
VPS53-218ENST00000575207 KBTBD13C9JR72 458 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 CLTBP09497 229 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 RAG1P15918 1043 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 CCDC129Q6ZRS4 1044 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 GPR142Q7Z601 462 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 FBXL18Q96ME1 805 aa20.65■□□□□ 0.9
VPS53-218ENST00000575207 GRXCR1A8MXD5 290 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 CNGA1P29973 690 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 FOXO4P98177 505 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 SPP2Q13103 211 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 RASIP1Q5U651 963 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 VPS37DQ86XT2 251 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 CNNM1Q9NRU3 951 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 FLRT1Q9NZU1 646 aa20.64■□□□□ 0.89
VPS53-218ENST00000575207 CLSPNQ9HAW4 1339 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 PEX10O60683 326 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 FRAT2O75474 233 aaPredicted RBP20.63■□□□□ 0.89
VPS53-218ENST00000575207 HMGCS2P54868 508 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 MAP2K5Q13163 448 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 SH3D19Q5HYK7 790 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 PLEKHH3Q7Z736 793 aa20.63■□□□□ 0.89
VPS53-218ENST00000575207 ZNF594Q96JF6 807 aaPredicted RBP20.63■□□□□ 0.89
VPS53-218ENST00000575207 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.63■□□□□ 0.89
VPS53-218ENST00000575207 ELL2O00472 640 aaPredicted RBP20.62■□□□□ 0.89
VPS53-218ENST00000575207 NEUROD2Q15784 382 aa20.62■□□□□ 0.89
VPS53-218ENST00000575207 ZNF280CQ8ND82 737 aa20.62■□□□□ 0.89
VPS53-218ENST00000575207 EDC3Q96F86 508 aaKnown RBP20.62■□□□□ 0.89
VPS53-218ENST00000575207 PORCNQ9H237 461 aa20.62■□□□□ 0.89
VPS53-218ENST00000575207 DOCK2Q92608 1830 aa20.62■□□□□ 0.89
VPS53-218ENST00000575207 ST18O60284 1047 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 Q3C1V9 767 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 SH3BP5LQ7L8J4 393 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 TRPV1Q8NER1 839 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 CHMP4AQ9BY43 222 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 TBC1D2Q9BYX2 928 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 RBPJLQ9UBG7 517 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 COG5Q9UP83 839 aa20.61■□□□□ 0.89
VPS53-218ENST00000575207 ENTPD3O75355 529 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 SLURP2P0DP57 97 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 HOXA7P31268 230 aaPredicted RBP20.6■□□□□ 0.89
VPS53-218ENST00000575207 ADCYAP1R1P41586 468 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 IRX3P78415 501 aaPredicted RBP20.6■□□□□ 0.89
VPS53-218ENST00000575207 RAB30Q15771 203 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 USP40Q9NVE5 1235 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 MSRAQ9UJ68 235 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 CHMP3Q9Y3E7 222 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 LRRC37A2A6NM11 1700 aa20.6■□□□□ 0.89
VPS53-218ENST00000575207 PRRC2BQ5JSZ5 2229 aaKnown RBP20.59■□□□□ 0.89
VPS53-218ENST00000575207 IGHA2P01877 340 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms