RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 ZMYND10O75800 440 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 EIF5P55010 431 aaKnown RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 TUBB2AQ13885 445 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 MLKLQ8NB16 471 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 TUBB2BQ9BVA1 445 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 DENND2AQ9ULE3 1009 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 MYO6Q9UM54 1294 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 RGPD8O14715 1765 aaPredicted RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 ATP5J2-PTCD1G3V325 749 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 PTCD1O75127 700 aaKnown RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 TUBB4BP68371 445 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 MORC3Q14149 939 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 IMMTQ16891 758 aaKnown RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 C1orf141Q5JVX7 400 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 FBXW10Q5XX13 1052 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 CCDC91Q7Z6B0 441 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 MB21D2Q8IYB1 491 aaPredicted RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 NAA15Q9BXJ9 866 aaKnown RBP16.37■□□□□ 0.21
SMG6-215ENST00000574501 HPCAL4Q9UM19 191 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 ADAMTS13Q76LX8 1427 aa16.37■□□□□ 0.21
SMG6-215ENST00000574501 FOXP2O15409 715 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 MFAP3LO75121 409 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 FGAP02671 866 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 GGCXP38435 758 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 PSEN1P49768 467 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 FXR1P51114 621 aaKnown RBP eCLIP16.36■□□□□ 0.21
SMG6-215ENST00000574501 SLC39A6Q13433 755 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 WDR93Q6P2C0 686 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 GSPT2Q8IYD1 628 aaKnown RBP16.36■□□□□ 0.21
SMG6-215ENST00000574501 CCDC148Q8NFR7 591 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 EHD4Q9H223 541 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 AARSP49588 968 aaKnown RBP eCLIP16.36■□□□□ 0.21
SMG6-215ENST00000574501 MNAT1P51948 309 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 WASHC4Q2M389 1173 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 APTXQ7Z2E3 356 aaKnown RBP16.36■□□□□ 0.21
SMG6-215ENST00000574501 RALYLQ86SE5 291 aaKnown RBP16.36■□□□□ 0.21
SMG6-215ENST00000574501 KRI1Q8N9T8 703 aaKnown RBP16.36■□□□□ 0.21
SMG6-215ENST00000574501 METTL22Q9BUU2 404 aaPredicted RBP16.36■□□□□ 0.21
SMG6-215ENST00000574501 CDHR2Q9BYE9 1310 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 DACH1Q9UI36 760 aa16.36■□□□□ 0.21
SMG6-215ENST00000574501 ENC1O14682 589 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 COBLO75128 1261 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 IFIT1P09914 478 aaKnown RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMG6-215ENST00000574501 SWT1Q5T5J6 900 aaKnown RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 NKX2-3Q8TAU0 364 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 KAT14Q9H8E8 782 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 HDAC6Q9UBN7 1215 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 HEG1Q9ULI3 1381 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 GYPCP04921 128 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 SARSP49591 514 aaKnown RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 MMP14P50281 582 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 ERVK-24P63145 666 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 CTCFLQ8NI51 663 aaPredicted RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 HINFPQ9BQA5 517 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 TRIM10Q9UDY6 481 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 TTF2Q9UNY4 1162 aaKnown RBP16.35■□□□□ 0.21
SMG6-215ENST00000574501 AMOTL2Q9Y2J4 779 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 FAM169AQ9Y6X4 670 aa16.35■□□□□ 0.21
SMG6-215ENST00000574501 LTKP29376 864 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 CDC25AP30304 524 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 ARHGAP25P42331 645 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 METAP2P50579 478 aaKnown RBP eCLIP16.34■□□□□ 0.21
SMG6-215ENST00000574501 STIM1Q13586 685 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 CT47A1Q5JQC4 288 aaPredicted RBP16.34■□□□□ 0.21
SMG6-215ENST00000574501 LMBR1LQ6UX01 489 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 NCOA7Q8NI08 942 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 CEP89Q96ST8 783 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 SLF1Q9BQI6 1058 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 CXorf56Q9H5V9 222 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 VIPAS39Q9H9C1 493 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 ZC3H4Q9UPT8 1303 aaKnown RBP16.34■□□□□ 0.21
SMG6-215ENST00000574501 HNRNPH1P31943 449 aaKnown RBP16.34■□□□□ 0.21
SMG6-215ENST00000574501 PLCD1P51178 756 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 AMPD2Q01433 879 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 TRDNQ13061 729 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 IP6K1Q92551 441 aa16.34■□□□□ 0.21
SMG6-215ENST00000574501 PXDNQ92626 1479 aa16.33■□□□□ 0.21
SMG6-215ENST00000574501 A0A087WZG4 1122 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 SRGAP2O75044 1071 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 TUBBP07437 444 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 USP14P54578 494 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 NT5DC1Q5TFE4 455 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 MICU3Q86XE3 530 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 SENP2Q9HC62 589 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 ADD3Q9UEY8 706 aaKnown RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 GUCA1BQ9UMX6 200 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 RNF225M0QZC1 329 aaPredicted RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 CASP1P29466 404 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 CCT6AP40227 531 aaKnown RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 RABL6Q3YEC7 729 aaPredicted RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 TTC19Q6DKK2 380 aaPredicted RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 KCNV1Q6PIU1 500 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 ANKRD13DQ6ZTN6 518 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 USP49Q70CQ1 688 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 SMYD4Q8IYR2 804 aaPredicted RBP16.33■□□□□ 0.2
SMG6-215ENST00000574501 COG1Q8WTW3 980 aa16.33■□□□□ 0.2
SMG6-215ENST00000574501 CAPZA3Q96KX2 299 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms