RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TPCN1Q9ULQ1 816 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 NAV1Q8NEY1 1877 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 CDK5RAP2Q96SN8 1893 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 MYO1BO43795 1136 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 ENTPD3O75355 529 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 EVX2Q03828 476 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 SART3Q15020 963 aaKnown RBP16.12■□□□□ 0.17
CCDC40-209ENST00000573474 SLC4A8Q2Y0W8 1093 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 SPDYE2Q495Y8 402 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 GPC2Q8N158 579 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 NKX2-3Q8TAU0 364 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 DHX36Q9H2U1 1008 aaKnown RBP16.12■□□□□ 0.17
CCDC40-209ENST00000573474 MKNK2Q9HBH9 465 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 CNOT7Q9UIV1 285 aaKnown RBP16.12■□□□□ 0.17
CCDC40-209ENST00000573474 FOCADQ5VW36 1801 aa16.12■□□□□ 0.17
CCDC40-209ENST00000573474 DICER1Q9UPY3 1922 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 GOLGB1Q14789 3259 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 LAMB1P07942 1786 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 SH2B2O14492 632 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 IFIT3O14879 490 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 RANBP6O60518 1105 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 PRDM1O75626 825 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 HLA-DOAP06340 250 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 CACNB3P54284 484 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 EVCP57679 992 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 ME3Q16798 604 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 FKBP1CQ5VVH2 108 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 C9orf131Q5VYM1 1079 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 C16orf86Q6ZW13 317 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 MICALL2Q8IY33 904 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 IGDCC4Q8TDY8 1250 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 DYNLL2Q96FJ2 89 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 INTS4Q96HW7 963 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 TAOK2Q9UL54 1235 aa16.11■□□□□ 0.17
CCDC40-209ENST00000573474 ANGEL1Q9UNK9 670 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 DDX60LQ5H9U9 1706 aaKnown RBP16.11■□□□□ 0.17
CCDC40-209ENST00000573474 SBF1O95248 1867 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 SHTN1A0MZ66 631 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 ERICH2A1L162 156 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 H7C1D1 291 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 LARGE1O95461 756 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 LIFRP42702 1097 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 CDK8P49336 464 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 APOBRQ0VD83 1088 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 TMEM67Q5HYA8 995 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 ZFPM1Q8IX07 1006 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 ZNF444Q8N0Y2 327 aaPredicted RBP16.1■□□□□ 0.17
CCDC40-209ENST00000573474 TMTC2Q8N394 836 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 ZNF274Q96GC6 653 aaPredicted RBP16.1■□□□□ 0.17
CCDC40-209ENST00000573474 UBAC1Q9BSL1 405 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 GPHNQ9NQX3 736 aaPredicted RBP16.1■□□□□ 0.17
CCDC40-209ENST00000573474 ECM29Q5VYK3 1845 aa16.1■□□□□ 0.17
CCDC40-209ENST00000573474 CLRN2A0PK11 232 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 WNT10BO00744 389 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 GABPAQ06546 454 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 TCP10Q12799 353 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 IQCA1Q86XH1 822 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 CHMP4CQ96CF2 233 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 EHD4Q9H223 541 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 LY9Q9HBG7 655 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 CWC22Q9HCG8 908 aaKnown RBP16.09■□□□□ 0.17
CCDC40-209ENST00000573474 FOXD4L1Q9NU39 408 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 PI4KBQ9UBF8 816 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 SWAP70Q9UH65 585 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 MYH1P12882 1939 aa16.09■□□□□ 0.17
CCDC40-209ENST00000573474 TSPY2A6NKD2 308 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 TCP10L2B9ZVM9 353 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 PFKFB2O60825 505 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 WTAPQ15007 396 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 NBPF9Q3BBW0 867 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 CCDC178Q5BJE1 867 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 FAM47AQ5JRC9 791 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 RBM26Q5T8P6 1007 aaKnown RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 SGMS1Q86VZ5 419 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 ZSCAN29Q8IWY8 852 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 FAM151AQ8WW52 585 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 ZSCAN10Q96SZ4 725 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 SLKQ9H2G2 1235 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 GPRC5DQ9NZD1 345 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 SERPINB13Q9UIV8 391 aa16.08■□□□□ 0.16
CCDC40-209ENST00000573474 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 COL2A1P02458 1487 aaPredicted RBP16.08■□□□□ 0.16
CCDC40-209ENST00000573474 KLF18A0A0U1RQI7 1052 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 DDTLA6NHG4 134 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-209ENST00000573474 RASA1P20936 1047 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 PDIA3P30101 505 aaKnown RBP16.07■□□□□ 0.16
CCDC40-209ENST00000573474 TFAP4Q01664 338 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 NFXL1Q6ZNB6 911 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 SH3BP5LQ7L8J4 393 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 SAMD7Q7Z3H4 446 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 FAM83AQ86UY5 434 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 FOXP4Q8IVH2 680 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-209ENST00000573474 CCDC83Q8IWF9 413 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 NECAB1Q8N987 351 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 SLC44A5Q8NCS7 719 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 ZKSCAN3Q9BRR0 538 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 VEZTQ9HBM0 779 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 BRPF3Q9ULD4 1205 aa16.07■□□□□ 0.16
CCDC40-209ENST00000573474 NAP1L2Q9ULW6 460 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-209ENST00000573474 ATRNL1Q5VV63 1379 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms