RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PLA2G4AP47712 749 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 PDE4BQ07343 736 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 RRP12Q5JTH9 1297 aaKnown RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 CDHR2Q9BYE9 1310 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 AKR1B15C9JRZ8 316 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 ADKP55263 362 aaKnown RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 WTAPQ15007 396 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 FOXP4Q8IVH2 680 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TMTC2Q8N394 836 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 ZNF579Q8NAF0 562 aaKnown RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 RABGGTAQ92696 567 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 STRBPQ96SI9 672 aaKnown RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 DEXIO95424 95 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 ATP2B1P20020 1258 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 ERCC5P28715 1186 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 CYP2C19P33261 490 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 PLCD1P51178 756 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 MAP3K9P80192 1104 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 PTPN21Q16825 1174 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 SENP2Q9HC62 589 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 NUP188Q5SRE5 1749 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 IL2RBP14784 551 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TDO2P48775 406 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TMEM139Q8IV31 216 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TXLNBQ8N3L3 684 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TC2NQ8N9U0 490 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 MRFAP1Q9Y605 127 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 WDR17Q8IZU2 1322 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 FOXN1O15353 648 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 KIF5CO60282 957 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 GPTP24298 496 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 CTSWP56202 376 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 MORC3Q14149 939 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 CT47A1Q5JQC4 288 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 AKNAD1Q5T1N1 836 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 TRMT44Q8IYL2 757 aaKnown RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 IFNL3Q8IZI9 196 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 STK11IPQ8N1F8 1099 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 NAA15Q9BXJ9 866 aaKnown RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 GREM2Q9H772 168 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 INTS13Q9NVM9 706 aa12.28□□□□□ -0.44
CCDC40-207ENST00000572253 FBXO2Q9UK22 296 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-207ENST00000572253 POTEB2H3BUK9 544 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 PDE8BO95263 885 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 ZNF18P17022 549 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 NKX1-1Q15270 411 aaPredicted RBP12.27□□□□□ -0.44
CCDC40-207ENST00000572253 TTLL11Q8NHH1 800 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 WDR24Q96S15 920 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 WWC3Q9ULE0 1092 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 KCNJ14Q9UNX9 436 aa12.27□□□□□ -0.44
CCDC40-207ENST00000572253 SEC31AO94979 1220 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 MBD4O95243 580 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 C4AP0C0L4 1744 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 C4BP0C0L5 1744 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 MDM2Q00987 491 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 KARSQ15046 597 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 RIC1Q4ADV7 1423 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 CC2D1AQ6P1N0 951 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 TOGARAM2Q6ZUX3 1019 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 CADPS2Q86UW7 1296 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 CTAGE1Q96RT6 745 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 RNF41Q9H4P4 317 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 ZSWIM5Q9P217 1185 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 PARP4Q9UKK3 1724 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 GLI3P10071 1580 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 SLC5A1P13866 664 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 PHKA1P46020 1223 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 CTDSPL2Q05D32 466 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 FMR1Q06787 632 aaKnown RBP eCLIP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 PUM3Q15397 648 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 NT5DC1Q5TFE4 455 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 GIGYF2Q6Y7W6 1299 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 PANX2Q96RD6 677 aa12.27□□□□□ -0.45
CCDC40-207ENST00000572253 FAM217BQ9NTX9 383 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 SRPRBQ9Y5M8 271 aaKnown RBP12.27□□□□□ -0.45
CCDC40-207ENST00000572253 COL18A1P39060 1754 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 SPATA31A3Q5VYP0 1347 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 IRS4O14654 1257 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-207ENST00000572253 GNAT2P19087 354 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 BMP6P22004 513 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 ARID4AP29374 1257 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-207ENST00000572253 TUBB2AQ13885 445 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 ZNF827Q17R98 1081 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 MAGEB6Q8N7X4 407 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 NUP133Q8WUM0 1156 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 TUBB2BQ9BVA1 445 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 TRMT112Q9UI30 125 aaKnown RBP12.26□□□□□ -0.45
CCDC40-207ENST00000572253 TUBB4BP68371 445 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 LPIN2Q92539 896 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 AK7Q96M32 723 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 UBAC1Q9BSL1 405 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 TRIM75PA6NK02 468 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 BMP15O95972 392 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 PRR29P0C7W0 189 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 OAS2P29728 719 aaKnown RBP12.26□□□□□ -0.45
CCDC40-207ENST00000572253 SMC1AQ14683 1233 aaKnown RBP12.26□□□□□ -0.45
CCDC40-207ENST00000572253 CCDC82Q8N4S0 544 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 CEP112Q8N8E3 955 aa12.26□□□□□ -0.45
CCDC40-207ENST00000572253 MYH7P12883 1935 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 ERLIN1O75477 346 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms