RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 CEP290O15078 2479 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 WTIPA6NIX2 430 aaPredicted RBP7.55□□□□□ -1.2
VPS53-208ENST00000570650 PCCAP05165 728 aaPredicted RBP7.55□□□□□ -1.2
VPS53-208ENST00000570650 HOXB7P09629 217 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 CCT4P50991 539 aaKnown RBP7.55□□□□□ -1.2
VPS53-208ENST00000570650 TAF1CQ15572 869 aaPredicted RBP7.55□□□□□ -1.2
VPS53-208ENST00000570650 ZNF511Q8NB15 262 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 MTMR14Q8NCE2 650 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 CCDC191Q8NCU4 936 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 SH3TC2Q8TF17 1288 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 HTATIP2Q9BUP3 242 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 PRO3102Q9H379 93 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 BSDC1Q9NW68 430 aaPredicted RBP7.55□□□□□ -1.2
VPS53-208ENST00000570650 TOR4AQ9NXH8 423 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 MINPP1Q9UNW1 487 aa7.55□□□□□ -1.2
VPS53-208ENST00000570650 A0A1W2PPC1 479 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 CHL1O00533 1208 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 MYO1BO43795 1136 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 USP2O75604 605 aaPredicted RBP7.54□□□□□ -1.2
VPS53-208ENST00000570650 GNRH1P01148 92 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 TMPOP42166 694 aaKnown RBP7.54□□□□□ -1.2
VPS53-208ENST00000570650 CTSWP56202 376 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 GTF2IP78347 998 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 KIF22Q14807 665 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 NBPF12Q5TAG4 269 aaPredicted RBP7.54□□□□□ -1.2
VPS53-208ENST00000570650 OPTNQ96CV9 577 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 SHISA4Q96DD7 197 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 MYD88Q99836 296 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 ELP3Q9H9T3 547 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 HMX1Q9NP08 348 aaPredicted RBP7.54□□□□□ -1.2
VPS53-208ENST00000570650 CWC25Q9NXE8 425 aaPredicted RBP7.54□□□□□ -1.2
VPS53-208ENST00000570650 LEMD3Q9Y2U8 911 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 NR2E3Q9Y5X4 410 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 SZT2Q5T011 3432 aa7.54□□□□□ -1.2
VPS53-208ENST00000570650 CCL15-CCL14A0A0B4J2E2 113 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 CLRN2A0PK11 232 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 FAM187AA6NFU0 413 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 WDHD1O75717 1129 aaPredicted RBP7.53□□□□□ -1.2
VPS53-208ENST00000570650 GTF2A2P52657 109 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 PRMT2P55345 433 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 CCL15Q16663 113 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 TXNRD3Q86VQ6 643 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 CYP4X1Q8N118 509 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 BRI3BPQ8WY22 251 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 JARID2Q92833 1246 aaPredicted RBP7.53□□□□□ -1.2
VPS53-208ENST00000570650 VEZTQ9HBM0 779 aa7.53□□□□□ -1.2
VPS53-208ENST00000570650 LAS1LQ9Y4W2 734 aaKnown RBP7.53□□□□□ -1.2
VPS53-208ENST00000570650 GJA8P48165 433 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 LACTBP83111 547 aaPredicted RBP7.52□□□□□ -1.21
VPS53-208ENST00000570650 RASA3Q14644 834 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 MTFR1Q15390 333 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 NR6A1Q15406 480 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 CFAP100Q494V2 611 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 DUSP27Q5VZP5 1158 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 UBE2Q1Q7Z7E8 422 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 FAM43AQ8N2R8 423 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 TTLL11Q8NHH1 800 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 CCER1Q8TC90 406 aaPredicted RBP7.52□□□□□ -1.21
VPS53-208ENST00000570650 EPS8L1Q8TE68 723 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 FOXJ1Q92949 421 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 ARHGAP39Q9C0H5 1083 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 GREM2Q9H772 168 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 PCDHAC2Q9Y5I4 1007 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 ECM29Q5VYK3 1845 aa7.52□□□□□ -1.21
VPS53-208ENST00000570650 SOX1O00570 391 aaPredicted RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 ZBTB7BO15156 539 aaPredicted RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 SIAH2O43255 324 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 TLR2O60603 784 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 GJB1P08034 283 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 KLRK1P26718 216 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 IGHMBP2P38935 993 aaKnown RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 TNFAIP1Q13829 316 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 CERS5Q8N5B7 392 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 EHBP1Q8NDI1 1231 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 SNIP1Q8TAD8 396 aaKnown RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 PRMT6Q96LA8 375 aaPredicted RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 METTL22Q9BUU2 404 aaPredicted RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 ANKRD2Q9GZV1 360 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 CD209Q9NNX6 404 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 ZCCHC17Q9NP64 241 aaKnown RBP7.51□□□□□ -1.21
VPS53-208ENST00000570650 OTOFQ9HC10 1997 aa7.51□□□□□ -1.21
VPS53-208ENST00000570650 TTC24A2A3L6 582 aaPredicted RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 F8W031 263 aaPredicted RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 J3QL48 77 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 FARP2O94887 1054 aaPredicted RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 DDX58O95786 925 aaKnown RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 SMPD1P17405 629 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 HOXD10P28358 340 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 GRK4P32298 578 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 KCNJ4P48050 445 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 RBM5P52756 815 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS53-208ENST00000570650 FKBP1AP62942 108 aaKnown RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 VGLL4Q14135 290 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 TMEM259Q4ZIN3 620 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 PKDCCQ504Y2 493 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 C4orf48Q5BLP8 95 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 PHAXQ9H814 394 aaKnown RBP7.5□□□□□ -1.21
VPS53-208ENST00000570650 CSADQ9Y600 493 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 SPEF2Q9C093 1822 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms