RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CAVIN4Q5BKX8 364 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 LINC00116Q8NCU8 138 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 CNNM3Q8NE01 707 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 OXER1Q8TDS5 423 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 XPO4Q9C0E2 1151 aaKnown RBP10.09□□□□□ -0.79
LINC00558-201ENST00000569422 PDCL3Q9H2J4 239 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 ZNF652Q9Y2D9 606 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 LAMA4Q16363 1823 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 SLIT2O94813 1529 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 CAVIN2O95810 425 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 ATP1A3P13637 1013 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 CMA1P23946 247 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 LONRF3Q496Y0 759 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 TBC1D9BQ66K14 1250 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 CNNM2Q9H8M5 875 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 VPS54Q9P1Q0 977 aa10.09□□□□□ -0.79
LINC00558-201ENST00000569422 AKAP17AQ02040 695 aaKnown RBP10.08□□□□□ -0.8
LINC00558-201ENST00000569422 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.08□□□□□ -0.8
LINC00558-201ENST00000569422 GRAMD1CQ8IYS0 662 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 ZNF654Q8IZM8 581 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 PRIMPOLQ96LW4 560 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 GNL3LQ9NVN8 582 aaKnown RBP10.08□□□□□ -0.8
LINC00558-201ENST00000569422 AATFQ9NY61 560 aaKnown RBP eCLIP10.08□□□□□ -0.8
LINC00558-201ENST00000569422 TNKSO95271 1327 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 STRCQ7RTU9 1775 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 NWD2Q9ULI1 1742 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 LOC102724159A0A0B4J2E5 919 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 FAM205CA6NFA0 338 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 LIFRP42702 1097 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 PWP2Q15269 919 aaKnown RBP10.08□□□□□ -0.8
LINC00558-201ENST00000569422 FAM47AQ5JRC9 791 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 EXOC8Q8IYI6 725 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 JMYQ8N9B5 988 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 NGLY1Q96IV0 654 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 MINPP1Q9UNW1 487 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 PAPPAQ13219 1627 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 NMT2O60551 498 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 GOLGA8FQ08AF8 430 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 GOLGA8DPQ0D2H9 430 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 ZNF827Q17R98 1081 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 SGMS1Q86VZ5 419 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 NOSTRINQ8IVI9 506 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 FANCBQ8NB91 859 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 PCDHB6Q9Y5E3 794 aa10.08□□□□□ -0.8
LINC00558-201ENST00000569422 WDR19Q8NEZ3 1342 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 USP17L12C9JPN9 530 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 USP17L21D6R901 530 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 FMNL1O95466 1100 aaPredicted RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 SERPINC1P01008 464 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 NAA30Q147X3 362 aaPredicted RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 PTPAQ15257 358 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 ALX1Q15699 326 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 NBPF5PQ86XG9 351 aaPredicted RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 STAG1Q8WVM7 1258 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 BCL2L12Q9HB09 334 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 KCNH3Q9ULD8 1083 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 POLR2DO15514 142 aaKnown RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 IFNAR1P17181 557 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 GNAT2P19087 354 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 NLRP12P59046 1061 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 ESR2Q92731 530 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 MRFAP1L1Q96HT8 127 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 FAM84BQ96KN1 310 aaPredicted RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 AK7Q96M32 723 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 MAP3K14Q99558 947 aa10.07□□□□□ -0.8
LINC00558-201ENST00000569422 V9GY48 417 aaPredicted RBP10.07□□□□□ -0.8
LINC00558-201ENST00000569422 GNPATO15228 680 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 PLEKHA8P1O95397 391 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 TPM4P67936 248 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 IFIT1BQ5T764 474 aaKnown RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 CRACR2BQ8N4Y2 399 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 RNF41Q9H4P4 317 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 PCDHA5Q9Y5H7 936 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 V9GYY5 206 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 LRP6O75581 1613 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 GOLGB1Q14789 3259 aaKnown RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 MMP1P03956 469 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 CYP2D6P10635 497 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 PRDX5P30044 214 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 TOB1P50616 345 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 CFAP100Q494V2 611 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 SARM1Q6SZW1 724 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 USP49Q70CQ1 688 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 KRI1Q8N9T8 703 aaKnown RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 CDCA7Q9BWT1 371 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 MYCNP04198 464 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 U2AF2P26368 475 aaKnown RBP eCLIP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 NBPF11Q86T75 865 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 FOXP4Q8IVH2 680 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 ZNF710Q8N1W2 664 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 WASF1Q92558 559 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 GPR101Q96P66 508 aaPredicted RBP10.06□□□□□ -0.8
LINC00558-201ENST00000569422 SETDB2Q96T68 719 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 TMEM51Q9NW97 253 aa10.06□□□□□ -0.8
LINC00558-201ENST00000569422 CASP1P29466 404 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 NOM1Q5C9Z4 860 aaKnown RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 OLFM4Q6UX06 510 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 TXNRD3Q86VQ6 643 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms