RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 MAPKAPK5Q8IW41 473 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 ZFPM1Q8IX07 1006 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 ZKSCAN4Q969J2 545 aaPredicted RBP11.86□□□□□ -0.51
CLN6-209ENST00000569336 MCOLN1Q9GZU1 580 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 PICK1Q9NRD5 415 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 PI4KBQ9UBF8 816 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 ZNF112Q9UJU3 913 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 TCRBV5S4A2TA0A5A2 114 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 CTNND1O60716 968 aaKnown RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 TRPA1O75762 1119 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 ZFYP08048 801 aaPredicted RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 INPP5BP32019 993 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 DYNLL1P63167 89 aaKnown RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 MAP3K10Q02779 954 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 PPATQ06203 517 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 UBE3CQ15386 1083 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 SMC5Q8IY18 1101 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 SCYL3Q8IZE3 742 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 CRACR2BQ8N4Y2 399 aaPredicted RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 KBTBD3Q8NAB2 608 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 EDC3Q96F86 508 aaKnown RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 DDRGK1Q96HY6 314 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLN6-209ENST00000569336 RNF186Q9NXI6 227 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 ZSWIM8A7E2V4 1837 aa11.85□□□□□ -0.51
CLN6-209ENST00000569336 COL11A1P12107 1806 aaPredicted RBP11.85□□□□□ -0.51
CLN6-209ENST00000569336 RBBP6Q7Z6E9 1792 aaKnown RBP11.84□□□□□ -0.51
CLN6-209ENST00000569336 SNAPC2Q13487 334 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 IFNL1Q8IU54 200 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 AMOTL1Q8IY63 956 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 RIOK1Q9BRS2 568 aaKnown RBP11.84□□□□□ -0.51
CLN6-209ENST00000569336 CFHR5Q9BXR6 569 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 TBC1D2Q9BYX2 928 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 MYH6P13533 1939 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 SALL3Q9BXA9 1300 aa11.84□□□□□ -0.51
CLN6-209ENST00000569336 CCL15-CCL14A0A0B4J2E2 113 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 TESPA1A2RU30 521 aaPredicted RBP11.83□□□□□ -0.52
CLN6-209ENST00000569336 PHF20L1A8MW92 1017 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 CETPP11597 493 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 GJA5P36382 358 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 DGKZQ13574 1117 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 CCL15Q16663 113 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 TSHZ3Q63HK5 1081 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 TTC6Q86TZ1 520 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 PI4K2BQ8TCG2 481 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 EHD4Q9H223 541 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 ZCCHC17Q9NP64 241 aaKnown RBP11.83□□□□□ -0.52
CLN6-209ENST00000569336 TAOK2Q9UL54 1235 aa11.83□□□□□ -0.52
CLN6-209ENST00000569336 IRF6O14896 467 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 MBD4O95243 580 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 NOM1Q5C9Z4 860 aaKnown RBP11.82□□□□□ -0.52
CLN6-209ENST00000569336 PRPF38BQ5VTL8 546 aaKnown RBP11.82□□□□□ -0.52
CLN6-209ENST00000569336 FOXP4Q8IVH2 680 aaPredicted RBP11.82□□□□□ -0.52
CLN6-209ENST00000569336 LCORLQ8N3X6 602 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 FSD1Q9BTV5 496 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 LNPKQ9C0E8 428 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 ATP8A2Q9NTI2 1148 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 GINM1Q9NU53 330 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 STAP2Q9UGK3 403 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 SAP30BPQ9UHR5 308 aaKnown RBP11.82□□□□□ -0.52
CLN6-209ENST00000569336 SERPINB13Q9UIV8 391 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 PALD1Q9ULE6 856 aa11.82□□□□□ -0.52
CLN6-209ENST00000569336 FAM196BA6NMK8 535 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN6-209ENST00000569336 ASNSP08243 561 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 PTPRAP18433 802 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 PDE1AP54750 535 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 SOX10P56693 466 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 IRX6P78412 446 aaPredicted RBP11.81□□□□□ -0.52
CLN6-209ENST00000569336 NUCB1Q02818 461 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 B4GALNT3Q6L9W6 998 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 METTL16Q86W50 562 aaKnown RBP11.81□□□□□ -0.52
CLN6-209ENST00000569336 CHD1LQ86WJ1 897 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 TICAM2Q86XR7 235 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 OTUD7AQ8TE49 926 aaPredicted RBP11.81□□□□□ -0.52
CLN6-209ENST00000569336 APPBP2Q92624 585 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 MS4A4AQ96JQ5 239 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 ARMT1Q9H993 441 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 KCNH4Q9UQ05 1017 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 ZNFX1Q9P2E3 1918 aaKnown RBP11.81□□□□□ -0.52
CLN6-209ENST00000569336 PLXNB2O15031 1838 aa11.81□□□□□ -0.52
CLN6-209ENST00000569336 A0A0G2JMZ2 1700 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 CXCL11O14625 94 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 RNF113AO15541 343 aaKnown RBP11.8□□□□□ -0.52
CLN6-209ENST00000569336 POLR3DP05423 398 aaPredicted RBP11.8□□□□□ -0.52
CLN6-209ENST00000569336 GNAT2P19087 354 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 CAP2P40123 477 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 SDR42E1Q8WUS8 393 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 BRI3BPQ8WY22 251 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 EVI5LQ96CN4 794 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 AS3MTQ9HBK9 375 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 MCM9Q9NXL9 1143 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 RLFQ13129 1914 aa11.8□□□□□ -0.52
CLN6-209ENST00000569336 PLXNA1Q9UIW2 1896 aa11.79□□□□□ -0.52
CLN6-209ENST00000569336 IGHDP01880 384 aa11.79□□□□□ -0.52
CLN6-209ENST00000569336 TAF1CQ15572 869 aaPredicted RBP11.79□□□□□ -0.52
CLN6-209ENST00000569336 SLC4A8Q2Y0W8 1093 aa11.79□□□□□ -0.52
CLN6-209ENST00000569336 FASTKD5Q7L8L6 764 aaKnown RBP11.79□□□□□ -0.52
CLN6-209ENST00000569336 DCP1AQ9NPI6 582 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms