RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ATP8A1Q9Y2Q0 1164 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 GPATCH8Q9UKJ3 1502 aaKnown RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 WASHC2CQ9Y4E1 1318 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 PLXNC1O60486 1568 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 CARMIL1Q5VZK9 1371 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 SZT2Q5T011 3432 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 NWD2Q9ULI1 1742 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 RGPD3A6NKT7 1758 aaPredicted RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 RGPD4Q7Z3J3 1758 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 TULP4Q9NRJ4 1543 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 TRIOBPQ9H2D6 2365 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 A0A087X0B3 334 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 SHTN1A0MZ66 631 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 OPLAHO14841 1288 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 PRPF3O43395 683 aaKnown RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 NDUFB5O43674 189 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 ALDH1L1O75891 902 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 TRIM37O94972 964 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 RHOQP17081 205 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 CD53P19397 219 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 LTKP29376 864 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 GATA4P43694 442 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 LBX1P52954 281 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 EPHA4P54764 986 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 FZD5Q13467 585 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 LRP8Q14114 963 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 TTF1Q15361 905 aaPredicted RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 INO80DQ53TQ3 878 aaPredicted RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 PRSS36Q5K4E3 855 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 DDX42Q86XP3 938 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS35-209ENST00000568642 C16orf71Q8IYS4 520 aaPredicted RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 TTC8Q8TAM2 541 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 EAF1Q96JC9 268 aaPredicted RBP3.87□□□□□ -1.79
VPS35-209ENST00000568642 CEP63Q96MT8 703 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 PTPRHQ9HD43 1115 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 JADE2Q9NQC1 790 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 GGT7Q9UJ14 662 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 LRFN2Q9ULH4 789 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 PLCH1Q4KWH8 1693 aa3.87□□□□□ -1.79
VPS35-209ENST00000568642 SLIT1O75093 1534 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 ARHGAP5Q13017 1502 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 TMEM238LA0A1B0GVL6 79 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 GNB5O14775 395 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 PPP1R12AO14974 1030 aaPredicted RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 EPB41L2O43491 1005 aaKnown RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 HYAL3O43820 417 aaPredicted RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 SCGB1D2O95969 90 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 IGFBP4P22692 258 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 SOX9P48436 509 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 FXR1P51114 621 aaKnown RBP eCLIP3.86□□□□□ -1.79
VPS35-209ENST00000568642 POU5F1BQ06416 359 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 FSTL1Q12841 308 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 MAPRE1Q15691 268 aaKnown RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 COX20Q5RI15 118 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 C10orf62Q5T681 223 aaPredicted RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 ALG1LQ6GMV1 187 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 FOXR1Q6PIV2 292 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 RIPOR1Q6ZS17 1223 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 C16orf86Q6ZW13 317 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 VPS37DQ86XT2 251 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 KDF1Q8NAX2 398 aaPredicted RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 EDARADDQ8WWZ3 215 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 APPBP2Q92624 585 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 DDX17Q92841 729 aaKnown RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 GMCL1Q96IK5 515 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 MPHOSPH6Q99547 160 aaKnown RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 CCDC113Q9H0I3 377 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 MUC3BQ9H195 1237 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 TPSG1Q9NRR2 321 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 GINM1Q9NU53 330 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 PGPEP1Q9NXJ5 209 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 GPSM3Q9Y4H4 160 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 SCINQ9Y6U3 715 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 VIRMAQ69YN4 1812 aaKnown RBP3.86□□□□□ -1.79
VPS35-209ENST00000568642 NCOA3Q9Y6Q9 1424 aa3.86□□□□□ -1.79
VPS35-209ENST00000568642 SLIT2O94813 1529 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 NEXMIFQ5QGS0 1516 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 KLRG2A4D1S0 409 aaPredicted RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 TMEM229AB2RXF0 380 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 CAND2O75155 1236 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 GARTP22102 1010 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 CDC27P30260 824 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 PLA2G5P39877 138 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 NASPP49321 788 aaPredicted RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 ORC1Q13415 861 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 OS9Q13438 667 aaPredicted RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 PI16Q6UXB8 463 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 HS2ST1Q7LGA3 356 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 LYSMD3Q7Z3D4 306 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 ATCAYQ86WG3 371 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 TRMT44Q8IYL2 757 aaKnown RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 FAM169BQ8N8A8 192 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 ENOX1Q8TC92 643 aaKnown RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 FBF1Q8TES7 1133 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 NEUROD6Q96NK8 337 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 FEZ1Q99689 392 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 RTFDC1Q9BY42 306 aaPredicted RBP3.85□□□□□ -1.79
VPS35-209ENST00000568642 ASPSCR1Q9BZE9 553 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 MTFR1LQ9H019 292 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 KCNQ5Q9NR82 932 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms