RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RPTORQ8N122 1335 aa17.02■□□□□ 0.32
CLN3-235ENST00000568497 DCAF15Q66K64 600 aa17.02■□□□□ 0.32
CLN3-235ENST00000568497 ABCF2Q9UG63 623 aa17.02■□□□□ 0.32
CLN3-235ENST00000568497 HMMRO75330 724 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 CYP2C8P10632 490 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 TTC39AQ5SRH9 613 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 TSHZ3Q63HK5 1081 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 MIGA2Q7L4E1 593 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 PRDM6Q9NQX0 595 aa17.01■□□□□ 0.31
CLN3-235ENST00000568497 TNPO2O14787 897 aaKnown RBP17■□□□□ 0.31
CLN3-235ENST00000568497 BCRP11274 1271 aa17■□□□□ 0.31
CLN3-235ENST00000568497 INPP5BP32019 993 aa17■□□□□ 0.31
CLN3-235ENST00000568497 HDLBPQ00341 1268 aaKnown RBP17■□□□□ 0.31
CLN3-235ENST00000568497 FAM83AQ86UY5 434 aa17■□□□□ 0.31
CLN3-235ENST00000568497 EDC3Q96F86 508 aaKnown RBP17■□□□□ 0.31
CLN3-235ENST00000568497 FAM161BQ96MY7 647 aa17■□□□□ 0.31
CLN3-235ENST00000568497 ZNF341Q9BYN7 854 aa17■□□□□ 0.31
CLN3-235ENST00000568497 PAK6Q9NQU5 681 aaPredicted RBP17■□□□□ 0.31
CLN3-235ENST00000568497 GNL3LQ9NVN8 582 aaKnown RBP17■□□□□ 0.31
CLN3-235ENST00000568497 KCNH4Q9UQ05 1017 aa17■□□□□ 0.31
CLN3-235ENST00000568497 MYO5AQ9Y4I1 1855 aaKnown RBP17■□□□□ 0.31
CLN3-235ENST00000568497 ZAP70P43403 619 aa16.99■□□□□ 0.31
CLN3-235ENST00000568497 OTUD7AQ8TE49 926 aaPredicted RBP16.99■□□□□ 0.31
CLN3-235ENST00000568497 PXYLP1Q8TE99 480 aa16.99■□□□□ 0.31
CLN3-235ENST00000568497 ZNF384Q8TF68 577 aa16.99■□□□□ 0.31
CLN3-235ENST00000568497 CRISPLD2Q9H0B8 497 aa16.99■□□□□ 0.31
CLN3-235ENST00000568497 DENND2AQ9ULE3 1009 aa16.99■□□□□ 0.31
CLN3-235ENST00000568497 MOGSQ13724 837 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 FKBP1CQ5VVH2 108 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 SPATA5Q8NB90 893 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 TEKT1Q969V4 418 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLN3-235ENST00000568497 ANTXR1Q9H6X2 564 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 GPR108Q9NPR9 543 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 PIH1D3Q9NQM4 214 aaKnown RBP16.98■□□□□ 0.31
CLN3-235ENST00000568497 VCANP13611 3396 aa16.98■□□□□ 0.31
CLN3-235ENST00000568497 IGHDP01880 384 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 ARID4AP29374 1257 aaPredicted RBP16.97■□□□□ 0.31
CLN3-235ENST00000568497 SLFNL1Q499Z3 407 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 WDR66Q8TBY9 1149 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 KIF1BPQ96EK5 621 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 GUCD1Q96NT3 240 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 NBPF3Q9H094 633 aa16.97■□□□□ 0.31
CLN3-235ENST00000568497 CHMP4BQ9H444 224 aaKnown RBP16.97■□□□□ 0.31
CLN3-235ENST00000568497 RPAP1Q9BWH6 1393 aaPredicted RBP16.97■□□□□ 0.31
CLN3-235ENST00000568497 CHGBP05060 677 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 CYP2E1P05181 493 aaPredicted RBP16.96■□□□□ 0.31
CLN3-235ENST00000568497 LDHBP07195 334 aaKnown RBP16.96■□□□□ 0.31
CLN3-235ENST00000568497 SLURP2P0DP57 97 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 IRF5Q13568 498 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 APOBEC3HQ6NTF7 200 aaKnown RBP16.96■□□□□ 0.31
CLN3-235ENST00000568497 ERC1Q8IUD2 1116 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 ANKLE1Q8NAG6 615 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 TBC1D22AQ8WUA7 517 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 MRIQ9BWK5 157 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 DCTPP1Q9H773 170 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 DAGLAQ9Y4D2 1042 aa16.96■□□□□ 0.31
CLN3-235ENST00000568497 CCDC158Q5M9N0 1113 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 B4GALNT3Q6L9W6 998 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 SMCR8Q8TEV9 937 aaPredicted RBP16.95■□□□□ 0.3
CLN3-235ENST00000568497 COA7Q96BR5 231 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 C11orf49Q9H6J7 331 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 RAI14Q9P0K7 980 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 ZNF112Q9UJU3 913 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 AK9Q5TCS8 1911 aa16.95■□□□□ 0.3
CLN3-235ENST00000568497 DDX60LQ5H9U9 1706 aaKnown RBP16.95■□□□□ 0.3
CLN3-235ENST00000568497 RAB11FIP3O75154 756 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 IFIT2P09913 472 aaKnown RBP16.94■□□□□ 0.3
CLN3-235ENST00000568497 MECOMQ03112 1051 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 CLASRPQ8N2M8 674 aaKnown RBP16.94■□□□□ 0.3
CLN3-235ENST00000568497 ZDHHC15Q96MV8 337 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 DNAJC2Q99543 621 aaKnown RBP16.94■□□□□ 0.3
CLN3-235ENST00000568497 LRRCC1Q9C099 1032 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 BOLA2Q9H3K6 86 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 MYH2Q9UKX2 1941 aa16.94■□□□□ 0.3
CLN3-235ENST00000568497 MAP4K4O95819 1239 aaPredicted RBP16.93■□□□□ 0.3
CLN3-235ENST00000568497 UQCRFS1P1P0C7P4 283 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 MDM2Q00987 491 aaPredicted RBP16.93■□□□□ 0.3
CLN3-235ENST00000568497 NFIAQ12857 509 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 HSP90AB4PQ58FF6 505 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 NOL9Q5SY16 702 aaKnown RBP16.93■□□□□ 0.3
CLN3-235ENST00000568497 GPAT2Q6NUI2 795 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 GADL1Q6ZQY3 521 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 DZIP1Q86YF9 867 aaKnown RBP16.93■□□□□ 0.3
CLN3-235ENST00000568497 ZFPM1Q8IX07 1006 aa16.93■□□□□ 0.3
CLN3-235ENST00000568497 CXCL11O14625 94 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 SEMA3EO15041 775 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 COL9A1P20849 921 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 TCP10Q12799 353 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 ZNF697Q5TEC3 545 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 CDC42EP5Q6NZY7 148 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 ERICH6Q7L0X2 663 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 ADGRA1Q86SQ6 560 aa16.92■□□□□ 0.3
CLN3-235ENST00000568497 HMGCRP04035 888 aa16.91■□□□□ 0.3
CLN3-235ENST00000568497 ANKRD45Q5TZF3 282 aa16.91■□□□□ 0.3
CLN3-235ENST00000568497 FASTKD5Q7L8L6 764 aaKnown RBP16.91■□□□□ 0.3
CLN3-235ENST00000568497 HMX1Q9NP08 348 aaPredicted RBP16.91■□□□□ 0.3
CLN3-235ENST00000568497 LRP2BPQ9P2M1 347 aa16.91■□□□□ 0.3
CLN3-235ENST00000568497 SALL1Q9NSC2 1324 aa16.91■□□□□ 0.3
CLN3-235ENST00000568497 POTEB2H3BUK9 544 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms