RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CNKSR2Q8WXI2 1034 aa23.51■■□□□ 1.35
CLN3-225ENST00000566824 EPB41L4AQ9HCS5 686 aaPredicted RBP23.51■■□□□ 1.35
CLN3-225ENST00000566824 MAP3K9P80192 1104 aa23.5■■□□□ 1.35
CLN3-225ENST00000566824 VGLL4Q14135 290 aa23.5■■□□□ 1.35
CLN3-225ENST00000566824 HOOK2Q96ED9 719 aa23.5■■□□□ 1.35
CLN3-225ENST00000566824 DHX36Q9H2U1 1008 aaKnown RBP23.5■■□□□ 1.35
CLN3-225ENST00000566824 ELP3Q9H9T3 547 aa23.5■■□□□ 1.35
CLN3-225ENST00000566824 MCM9Q9NXL9 1143 aa23.5■■□□□ 1.35
CLN3-225ENST00000566824 ATAD5Q96QE3 1844 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 SLC10A3P09131 477 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 GJA5P36382 358 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 ZNF589Q86UQ0 364 aaPredicted RBP23.49■■□□□ 1.35
CLN3-225ENST00000566824 ANKRD13AQ8IZ07 590 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.49■■□□□ 1.35
CLN3-225ENST00000566824 PI4KBQ9UBF8 816 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 SNCAIPQ9Y6H5 919 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 THSD7BQ9C0I4 1608 aa23.49■■□□□ 1.35
CLN3-225ENST00000566824 TBC1D12O60347 775 aa23.48■■□□□ 1.35
CLN3-225ENST00000566824 MKRN3Q13064 507 aaKnown RBP23.48■■□□□ 1.35
CLN3-225ENST00000566824 SHROOM1Q2M3G4 852 aaPredicted RBP23.48■■□□□ 1.35
CLN3-225ENST00000566824 VPS53Q5VIR6 699 aa23.48■■□□□ 1.35
CLN3-225ENST00000566824 METTL16Q86W50 562 aaKnown RBP23.48■■□□□ 1.35
CLN3-225ENST00000566824 IL25Q9H293 177 aa23.48■■□□□ 1.35
CLN3-225ENST00000566824 HELLSQ9NRZ9 838 aa23.48■■□□□ 1.35
CLN3-225ENST00000566824 ATP8A2Q9NTI2 1148 aa23.48■■□□□ 1.35
CLN3-225ENST00000566824 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.48■■□□□ 1.35
CLN3-225ENST00000566824 DOCK1Q14185 1865 aa23.47■■□□□ 1.35
CLN3-225ENST00000566824 JAG1P78504 1218 aa23.47■■□□□ 1.35
CLN3-225ENST00000566824 SLC10A4Q96EP9 437 aa23.47■■□□□ 1.35
CLN3-225ENST00000566824 USP17L12C9JPN9 530 aa23.46■■□□□ 1.35
CLN3-225ENST00000566824 USP17L21D6R901 530 aa23.46■■□□□ 1.35
CLN3-225ENST00000566824 POLR3DP05423 398 aaPredicted RBP23.46■■□□□ 1.35
CLN3-225ENST00000566824 MCMDC2Q4G0Z9 681 aa23.46■■□□□ 1.35
CLN3-225ENST00000566824 CTR9Q6PD62 1173 aa23.46■■□□□ 1.35
CLN3-225ENST00000566824 CWC27Q6UX04 472 aaKnown RBP23.46■■□□□ 1.35
CLN3-225ENST00000566824 PHIPQ8WWQ0 1821 aa23.46■■□□□ 1.35
CLN3-225ENST00000566824 LAMB1P07942 1786 aa23.45■■□□□ 1.34
CLN3-225ENST00000566824 TICAM2Q86XR7 235 aa23.45■■□□□ 1.34
CLN3-225ENST00000566824 FOXP4Q8IVH2 680 aaPredicted RBP23.45■■□□□ 1.34
CLN3-225ENST00000566824 DYNLL2Q96FJ2 89 aa23.45■■□□□ 1.34
CLN3-225ENST00000566824 DIAPH3Q9NSV4 1193 aa23.45■■□□□ 1.34
CLN3-225ENST00000566824 PATL2C9JE40 543 aaKnown RBP23.44■■□□□ 1.34
CLN3-225ENST00000566824 HLA-DOAP06340 250 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 ECE1P42892 770 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 C12orf60Q5U649 245 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 SPRYD7Q5W111 196 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 TTC6Q86TZ1 520 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 CCDC84Q86UT8 332 aaPredicted RBP23.44■■□□□ 1.34
CLN3-225ENST00000566824 IFNL3Q8IZI9 196 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 SLC44A5Q8NCS7 719 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 CCDC102AQ96A19 550 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 WNK4Q96J92 1243 aa23.44■■□□□ 1.34
CLN3-225ENST00000566824 HERC5Q9UII4 1024 aaKnown RBP23.44■■□□□ 1.34
CLN3-225ENST00000566824 UNCXA6NJT0 531 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 APPP05067 770 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 GNAT2P19087 354 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 CHMLP26374 656 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 KIF23Q02241 960 aaPredicted RBP23.43■■□□□ 1.34
CLN3-225ENST00000566824 GABPAQ06546 454 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 NOL9Q5SY16 702 aaKnown RBP23.43■■□□□ 1.34
CLN3-225ENST00000566824 CRACR2BQ8N4Y2 399 aaPredicted RBP23.43■■□□□ 1.34
CLN3-225ENST00000566824 OPTNQ96CV9 577 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 EHD4Q9H223 541 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 CSADQ9Y600 493 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 PCNTO95613 3336 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 MYH8P13535 1937 aa23.43■■□□□ 1.34
CLN3-225ENST00000566824 SHMT1P34896 483 aa23.42■■□□□ 1.34
CLN3-225ENST00000566824 JMYQ8N9B5 988 aa23.42■■□□□ 1.34
CLN3-225ENST00000566824 SERPINB13Q9UIV8 391 aa23.42■■□□□ 1.34
CLN3-225ENST00000566824 CCDC171Q6TFL3 1326 aa23.42■■□□□ 1.34
CLN3-225ENST00000566824 GDF11O95390 407 aa23.41■■□□□ 1.34
CLN3-225ENST00000566824 GIMAP6Q6P9H5 292 aa23.41■■□□□ 1.34
CLN3-225ENST00000566824 OTUD5Q96G74 571 aa23.41■■□□□ 1.34
CLN3-225ENST00000566824 SPDYE5A6NIY4 337 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 CTNND1O60716 968 aaKnown RBP23.4■■□□□ 1.34
CLN3-225ENST00000566824 TDO2P48775 406 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 NOGQ13253 232 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 BMP2KLQ5H9B9 411 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 TATDN1Q6P1N9 297 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 SCYL3Q8IZE3 742 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 STK11IPQ8N1F8 1099 aa23.4■■□□□ 1.34
CLN3-225ENST00000566824 MINDY4BA8MYZ0 360 aa23.39■■□□□ 1.34
CLN3-225ENST00000566824 HIP1O00291 1037 aa23.39■■□□□ 1.34
CLN3-225ENST00000566824 HSPD1P10809 573 aaKnown RBP23.39■■□□□ 1.34
CLN3-225ENST00000566824 CAP2P40123 477 aa23.39■■□□□ 1.34
CLN3-225ENST00000566824 SBK1Q52WX2 424 aa23.39■■□□□ 1.34
CLN3-225ENST00000566824 TRIM34Q9BYJ4 488 aa23.39■■□□□ 1.34
CLN3-225ENST00000566824 PTPRAP18433 802 aa23.38■■□□□ 1.33
CLN3-225ENST00000566824 MAP2K2P36507 400 aa23.38■■□□□ 1.33
CLN3-225ENST00000566824 ERO1BQ86YB8 467 aa23.38■■□□□ 1.33
CLN3-225ENST00000566824 DDRGK1Q96HY6 314 aa23.38■■□□□ 1.33
CLN3-225ENST00000566824 ARPP21Q9UBL0 812 aaPredicted RBP23.38■■□□□ 1.33
CLN3-225ENST00000566824 TACC3Q9Y6A5 838 aa23.37■■□□□ 1.33
CLN3-225ENST00000566824 PTPRFP10586 1907 aa23.37■■□□□ 1.33
CLN3-225ENST00000566824 IRF6O14896 467 aa23.36■■□□□ 1.33
CLN3-225ENST00000566824 ZBTB48P10074 688 aaPredicted RBP23.36■■□□□ 1.33
CLN3-225ENST00000566824 CDK8P49336 464 aa23.36■■□□□ 1.33
CLN3-225ENST00000566824 C16orf86Q6ZW13 317 aa23.36■■□□□ 1.33
CLN3-225ENST00000566824 NAPBQ9H115 298 aa23.36■■□□□ 1.33
CLN3-225ENST00000566824 FGAP02671 866 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms