RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	TRIM75P	A6NK02	468 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	CYP2C8	P10632	490 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	RLBP1	P12271	317 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	FOXP4	Q8IVH2	680 aa	Predicted RBP	18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	NKX2-3	Q8TAU0	364 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	CHMP4B	Q9H444	224 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	C1orf115	Q9H7X2	142 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	SNRK	Q9NRH2	765 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	AGTPBP1	Q9UPW5	1226 aa		18.23	■□□□□ 0.51
CLN3-222	ENST00000566083	CYP2E1	P05181	493 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	EN2	P19622	333 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	OSBP	P22059	807 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	GRK4	P32298	578 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	CAP2	P40123	477 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	ZNF280C	Q8ND82	737 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	TRIM34	Q9BYJ4	488 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	AATF	Q9NY61	560 aa	Known RBP eCLIP	18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	DOCK1	Q14185	1865 aa		18.22	■□□□□ 0.51
CLN3-222	ENST00000566083	MYPN	Q86TC9	1320 aa		18.21	■□□□□ 0.51
CLN3-222	ENST00000566083	USP17L5	A8MUK1	530 aa		18.21	■□□□□ 0.51
CLN3-222	ENST00000566083	CAPN2	P17655	700 aa		18.21	■□□□□ 0.51
CLN3-222	ENST00000566083	CEP85	Q6P2H3	762 aa		18.21	■□□□□ 0.51
CLN3-222	ENST00000566083	DBNL	Q9UJU6	430 aa	Known RBP	18.21	■□□□□ 0.51
CLN3-222	ENST00000566083	ASNS	P08243	561 aa		18.2	■□□□□ 0.5
CLN3-222	ENST00000566083	GCLC	P48506	637 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-222	ENST00000566083	UBXN2A	P68543	259 aa		18.2	■□□□□ 0.5
CLN3-222	ENST00000566083	SLAIN1	Q8ND83	568 aa		18.2	■□□□□ 0.5
CLN3-222	ENST00000566083	SH3TC2	Q8TF17	1288 aa		18.2	■□□□□ 0.5
CLN3-222	ENST00000566083	HMMR	O75330	724 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	HLA-DOA	P06340	250 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	ZAP70	P43403	619 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	MAP3K12	Q12852	859 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	SPP2	Q13103	211 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	TGFBRAP1	Q8WUH2	860 aa		18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	EAF2	Q96CJ1	260 aa	Predicted RBP	18.19	■□□□□ 0.5
CLN3-222	ENST00000566083	PTPRF	P10586	1907 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	CTGF	P29279	349 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	FAM110C	Q1W6H9	321 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	METTL16	Q86W50	562 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	WDR18	Q9BV38	432 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	BIN2	Q9UBW5	565 aa	Predicted RBP	18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	DDX19B	Q9UMR2	479 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	FLT1	P17948	1338 aa		18.18	■□□□□ 0.5
CLN3-222	ENST00000566083	FAM196B	A6NMK8	535 aa		18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	IDH1	O75874	414 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	CYP7A1	P22680	504 aa		18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	TTF1	Q15361	905 aa	Predicted RBP	18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	SH3D19	Q5HYK7	790 aa		18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	COA7	Q96BR5	231 aa		18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	MAST2	Q6P0Q8	1798 aa		18.17	■□□□□ 0.5
CLN3-222	ENST00000566083	C19orf81	C9J6K1	198 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	TNPO2	O14787	897 aa	Known RBP	18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	IRF5	Q13568	498 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	AACS	Q86V21	672 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	MAPKAPK5	Q8IW41	473 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	PXYLP1	Q8TE99	480 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	PIH1D3	Q9NQM4	214 aa	Known RBP	18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	PHIP	Q8WWQ0	1821 aa		18.16	■□□□□ 0.5
CLN3-222	ENST00000566083	GJB1	P08034	283 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	SLURP2	P0DP57	97 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	HMGCS2	P54868	508 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	PRKCZ	Q05513	592 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	CLASRP	Q8N2M8	674 aa	Known RBP	18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	PANK1	Q8TE04	598 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	TLR7	Q9NYK1	1049 aa	Known RBP	18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	TMOD4	Q9NZQ9	345 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	EXOC6B	Q9Y2D4	811 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	CENPF	P49454	3210 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	ECM2	O94769	699 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	MYC	P01106	439 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	BACE1	P56817	501 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	TREML2	Q5T2D2	321 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	ADGRA1	Q86SQ6	560 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	ANKRD13C	Q8N6S4	541 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	RHPN1	Q8TCX5	695 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	KIF1BP	Q96EK5	621 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	PALD1	Q9ULE6	856 aa		18.15	■□□□□ 0.5
CLN3-222	ENST00000566083	CEP290	O15078	2479 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	ADCY3	O60266	1144 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	USP5	P45974	858 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	GJA8	P48165	433 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	FLT3LG	P49771	235 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	TTC6	Q86TZ1	520 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	CCDC84	Q86UT8	332 aa	Predicted RBP	18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	MAGEB6	Q8N7X4	407 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	RNF208	Q9H0X6	261 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	PCDH10	Q9P2E7	1040 aa		18.14	■□□□□ 0.49
CLN3-222	ENST00000566083	ZSWIM8	A7E2V4	1837 aa		18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	USP17L10	C9JJH3	530 aa		18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	RAB11FIP3	O75154	756 aa		18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	CCL5	P13501	91 aa		18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	HOXA7	P31268	230 aa	Predicted RBP	18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	IRX3	P78415	501 aa	Predicted RBP	18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	MTFR1	Q15390	333 aa		18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	18.13	■□□□□ 0.49
CLN3-222	ENST00000566083	GTF3C2	Q8WUA4	911 aa	Predicted RBP	18.13	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms