RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 WIPI1Q5MNZ9 446 aaPredicted RBP5.63□□□□□ -1.51
VPS35-203ENST00000562420 ZDHHC13Q8IUH4 622 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 ISL2Q96A47 359 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 PLPPR2Q96GM1 343 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 WNT10AQ9GZT5 417 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 GGT7Q9UJ14 662 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 UNCXA6NJT0 531 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 DCDC2CA8MYV0 355 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 COBLO75128 1261 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 PF4P02776 101 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 HCLS1P14317 486 aaPredicted RBP5.62□□□□□ -1.51
VPS35-203ENST00000562420 MPP2Q14168 576 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 INPP5AQ14642 412 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 NFKBIBQ15653 356 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 PPM1JQ5JR12 505 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 FAM196AQ6ZSG2 479 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 ZNF507Q8TCN5 953 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 RNF34Q969K3 372 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 C1GALT1Q9NS00 363 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 ADAM30Q9UKF2 790 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 DAGLAQ9Y4D2 1042 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 SUPT16HQ9Y5B9 1047 aaKnown RBP5.62□□□□□ -1.51
VPS35-203ENST00000562420 PRR36Q9H6K5 1346 aa5.62□□□□□ -1.51
VPS35-203ENST00000562420 GREM1O60565 184 aa5.61□□□□□ -1.51
VPS35-203ENST00000562420 BPNT1O95861 308 aa5.61□□□□□ -1.51
VPS35-203ENST00000562420 EIF4A3P38919 411 aaKnown RBP5.61□□□□□ -1.51
VPS35-203ENST00000562420 PDE4BQ07343 736 aa5.61□□□□□ -1.51
VPS35-203ENST00000562420 SNAP47Q5SQN1 464 aa5.61□□□□□ -1.51
VPS35-203ENST00000562420 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.61□□□□□ -1.51
VPS35-203ENST00000562420 F13BP05160 661 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 INTS5Q6P9B9 1019 aaKnown RBP5.6□□□□□ -1.51
VPS35-203ENST00000562420 OGFOD3Q6PK18 319 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 BNC2Q6ZN30 1099 aaPredicted RBP5.6□□□□□ -1.51
VPS35-203ENST00000562420 METTL16Q86W50 562 aaKnown RBP5.6□□□□□ -1.51
VPS35-203ENST00000562420 C12orf40Q86WS4 652 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS35-203ENST00000562420 SHKBP1Q8TBC3 707 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 TBC1D32Q96NH3 1257 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 COPRSQ9NQ92 184 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 PICK1Q9NRD5 415 aa5.6□□□□□ -1.51
VPS35-203ENST00000562420 PRR19A6NJB7 356 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 DYNC1LI2O43237 492 aaPredicted RBP5.59□□□□□ -1.51
VPS35-203ENST00000562420 RNGTTO60942 597 aaKnown RBP5.59□□□□□ -1.51
VPS35-203ENST00000562420 LRIG2O94898 1065 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 F13A1P00488 732 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 CYP27C1Q4G0S4 372 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 TMEM201Q5SNT2 666 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 FBXL19Q6PCT2 694 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 CDC37L1Q7L3B6 337 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 REC114Q7Z4M0 266 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 USP48Q86UV5 1035 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 HID1Q8IV36 788 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 MRPL41Q8IXM3 137 aaKnown RBP5.59□□□□□ -1.51
VPS35-203ENST00000562420 GOLM1Q8NBJ4 401 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 MFSD14AQ96MC6 490 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 NT5C1AQ9BXI3 368 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 ATG3Q9NT62 314 aa5.59□□□□□ -1.51
VPS35-203ENST00000562420 PRAMEF27A3QJZ7 478 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 KIAA1324LA8MWY0 1029 aaPredicted RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 ADMP35318 185 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 GRIK1P39086 918 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 CD97P48960 835 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 ETF1P62495 437 aaKnown RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 CWF19L2Q2TBE0 894 aaKnown RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 LCE1DQ5T752 114 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 MFSD2AQ8NA29 543 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 ZNF296Q8WUU4 475 aaPredicted RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 OSBPL1AQ9BXW6 950 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 MKNK2Q9HBH9 465 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 SSU72Q9NP77 194 aaKnown RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 PIM2Q9P1W9 311 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 ADAMTS1Q9UHI8 967 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 DDX41Q9UJV9 622 aaKnown RBP5.58□□□□□ -1.52
VPS35-203ENST00000562420 CSADQ9Y600 493 aa5.58□□□□□ -1.52
VPS35-203ENST00000562420 MINDY4BA8MYZ0 360 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 WDR64B1ANS9 1081 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 ATE1O95260 518 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 CST3P01034 146 aaPredicted RBP5.57□□□□□ -1.52
VPS35-203ENST00000562420 FOSL1P15407 271 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 GRK4P32298 578 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 CDK8P49336 464 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 FAM160A1Q05DH4 1040 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 SLBPQ14493 270 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS35-203ENST00000562420 DUSP27Q5VZP5 1158 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 SLC6A19Q695T7 634 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 MCTP1Q6DN14 999 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 ARMCX6Q7L4S7 300 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 KIAA0825Q8IV33 1275 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 SLITRK4Q8IW52 837 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 REXO1Q8N1G1 1221 aaKnown RBP5.57□□□□□ -1.52
VPS35-203ENST00000562420 JARID2Q92833 1246 aaPredicted RBP5.57□□□□□ -1.52
VPS35-203ENST00000562420 COX4I2Q96KJ9 171 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 SPATA32Q96LK8 384 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 DUSP23Q9BVJ7 150 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 FOXQ1Q9C009 403 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 LEMD3Q9Y2U8 911 aa5.57□□□□□ -1.52
VPS35-203ENST00000562420 IGF2BP3O00425 579 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS35-203ENST00000562420 TGFB1P01137 390 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 PGRP06401 933 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 SSTR4P31391 388 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms