RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 STX6O43752 255 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 PPFIA3O75145 1194 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 WDHD1O75717 1129 aaPredicted RBP24.96■■□□□ 1.59
CLN3-209ENST00000561689 FAM47AQ5JRC9 791 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 SGMS1Q86VZ5 419 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 NSUN7Q8NE18 718 aaKnown RBP24.96■■□□□ 1.59
CLN3-209ENST00000561689 MRIQ9BWK5 157 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 SPON1Q9HCB6 807 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 NFKBIEO00221 500 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 PSMD14O00487 310 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 RXRAP19793 462 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 WTAPQ15007 396 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 APOA5Q6Q788 366 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 GBP4Q96PP9 640 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 LLPHQ9BRT6 129 aaKnown RBP24.96■■□□□ 1.59
CLN3-209ENST00000561689 DDX4Q9NQI0 724 aaKnown RBP24.96■■□□□ 1.59
CLN3-209ENST00000561689 ZNRF3Q9ULT6 936 aa24.96■■□□□ 1.59
CLN3-209ENST00000561689 WDR33Q9C0J8 1336 aaKnown RBP24.95■■□□□ 1.59
CLN3-209ENST00000561689 HDLBPQ00341 1268 aaKnown RBP24.95■■□□□ 1.58
CLN3-209ENST00000561689 MYL10Q9BUA6 226 aa24.95■■□□□ 1.58
CLN3-209ENST00000561689 TNKSO95271 1327 aa24.95■■□□□ 1.58
CLN3-209ENST00000561689 CCDC69A6NI79 296 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 LARP1BQ659C4 914 aaKnown RBP24.94■■□□□ 1.58
CLN3-209ENST00000561689 RSBN1LQ6PCB5 846 aaPredicted RBP24.94■■□□□ 1.58
CLN3-209ENST00000561689 MICU3Q86XE3 530 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 SLC44A5Q8NCS7 719 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 ZSCAN10Q96SZ4 725 aaPredicted RBP24.94■■□□□ 1.58
CLN3-209ENST00000561689 MTA3Q9BTC8 594 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 SERPINA10Q9UK55 444 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 SLC12A7Q9Y666 1083 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 ADAMTSL1Q8N6G6 1762 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 PTPDC1A2A3K4 754 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 VIL1P09327 827 aaKnown RBP24.94■■□□□ 1.58
CLN3-209ENST00000561689 SMARCC2Q8TAQ2 1214 aa24.94■■□□□ 1.58
CLN3-209ENST00000561689 ROBO3Q96MS0 1386 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 ZBTB43O43298 467 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 BAG4O95429 457 aaKnown RBP24.93■■□□□ 1.58
CLN3-209ENST00000561689 SEC23AQ15436 765 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 CCDC144CPQ8IYA2 1237 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 CHAMP1Q96JM3 812 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 MKNK2Q9HBH9 465 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 ZBTB12Q9Y330 459 aaPredicted RBP24.93■■□□□ 1.58
CLN3-209ENST00000561689 BRCA1P38398 1863 aaKnown RBP24.93■■□□□ 1.58
CLN3-209ENST00000561689 DEKP35659 375 aaKnown RBP24.93■■□□□ 1.58
CLN3-209ENST00000561689 METAP2P50579 478 aaKnown RBP eCLIP24.93■■□□□ 1.58
CLN3-209ENST00000561689 IQCA1Q86XH1 822 aa24.93■■□□□ 1.58
CLN3-209ENST00000561689 ENAHQ8N8S7 591 aaPredicted RBP24.93■■□□□ 1.58
CLN3-209ENST00000561689 ZNF646O15015 1829 aaPredicted RBP24.92■■□□□ 1.58
CLN3-209ENST00000561689 LAMB1P07942 1786 aa24.92■■□□□ 1.58
CLN3-209ENST00000561689 TSPY2A6NKD2 308 aa24.92■■□□□ 1.58
CLN3-209ENST00000561689 NMT2O60551 498 aa24.92■■□□□ 1.58
CLN3-209ENST00000561689 ZSCAN22P10073 491 aaPredicted RBP24.92■■□□□ 1.58
CLN3-209ENST00000561689 CACNB3P54284 484 aa24.92■■□□□ 1.58
CLN3-209ENST00000561689 NFIAQ12857 509 aa24.92■■□□□ 1.58
CLN3-209ENST00000561689 VPS37CA5D8V6 355 aaPredicted RBP24.91■■□□□ 1.58
CLN3-209ENST00000561689 DHX16O60231 1041 aaKnown RBP24.91■■□□□ 1.58
CLN3-209ENST00000561689 CLEC17AQ6ZS10 378 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 TMTC2Q8N394 836 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 NAV1Q8NEY1 1877 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 CHMP4CQ96CF2 233 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 MTMR6Q9Y217 621 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 SRCAPQ6ZRS2 3230 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 CPLX1O14810 134 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 PDCP20941 246 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 ADD1P35611 737 aaKnown RBP24.91■■□□□ 1.58
CLN3-209ENST00000561689 CFAP100Q494V2 611 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 SYNE3Q6ZMZ3 975 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 FAM184AQ8NB25 1140 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 JDP2Q8WYK2 163 aa24.91■■□□□ 1.58
CLN3-209ENST00000561689 MYO3BQ8WXR4 1341 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 TFAP4Q01664 338 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 RASSF7Q02833 373 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 CXCL9Q07325 125 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 FOXD4L6Q3SYB3 417 aaPredicted RBP24.9■■□□□ 1.58
CLN3-209ENST00000561689 FOXD4L3Q6VB84 417 aaPredicted RBP24.9■■□□□ 1.58
CLN3-209ENST00000561689 ILDR2Q71H61 639 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 GMLQ99445 158 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 UTRNP46939 3433 aa24.9■■□□□ 1.58
CLN3-209ENST00000561689 GOLGA8AA7E2F4 631 aa24.89■■□□□ 1.58
CLN3-209ENST00000561689 CDC27P30260 824 aa24.89■■□□□ 1.58
CLN3-209ENST00000561689 HMGN5P82970 282 aaKnown RBP24.89■■□□□ 1.58
CLN3-209ENST00000561689 OSBPL5Q9H0X9 879 aaPredicted RBP24.89■■□□□ 1.58
CLN3-209ENST00000561689 CDK5RAP2Q96SN8 1893 aa24.89■■□□□ 1.58
CLN3-209ENST00000561689 CDK8P49336 464 aa24.89■■□□□ 1.57
CLN3-209ENST00000561689 IFIT1BQ5T764 474 aaKnown RBP24.89■■□□□ 1.57
CLN3-209ENST00000561689 C16orf86Q6ZW13 317 aa24.89■■□□□ 1.57
CLN3-209ENST00000561689 ZFPM1Q8IX07 1006 aa24.88■■□□□ 1.57
CLN3-209ENST00000561689 ZNF444Q8N0Y2 327 aaPredicted RBP24.88■■□□□ 1.57
CLN3-209ENST00000561689 PRMT6Q96LA8 375 aaPredicted RBP24.88■■□□□ 1.57
CLN3-209ENST00000561689 RASA1P20936 1047 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 TCP10Q12799 353 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 TTC6Q86TZ1 520 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 ZNF654Q8IZM8 581 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 TDRD3Q9H7E2 651 aaKnown RBP24.87■■□□□ 1.57
CLN3-209ENST00000561689 FAM217BQ9NTX9 383 aaPredicted RBP24.87■■□□□ 1.57
CLN3-209ENST00000561689 FDPSP14324 419 aaKnown RBP24.87■■□□□ 1.57
CLN3-209ENST00000561689 FOSBP53539 338 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 MCTP1Q6DN14 999 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 CDC37L1Q7L3B6 337 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 NUP133Q8WUM0 1156 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms