RNA–Protein interactions for RNA: ENST00000561187.1

SNRPA1-215, Transcript of small nuclear ribonucleoprotein polypeptide A', human

TSL 2

Gene SNRPA1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRPA1-215	ENST00000561187	CCDC8	Q9H0W5	538 aa	Predicted RBP	33.19	■■■□□ 2.9
SNRPA1-215	ENST00000561187	GPR108	Q9NPR9	543 aa		33.19	■■■□□ 2.9
SNRPA1-215	ENST00000561187	HOXD10	P28358	340 aa		33.18	■■■□□ 2.9
SNRPA1-215	ENST00000561187	ZAP70	P43403	619 aa		33.18	■■■□□ 2.9
SNRPA1-215	ENST00000561187	RRP1B	Q14684	758 aa	Known RBP	33.18	■■■□□ 2.9
SNRPA1-215	ENST00000561187	SMCR8	Q8TEV9	937 aa	Predicted RBP	33.18	■■■□□ 2.9
SNRPA1-215	ENST00000561187	MGAM	O43451	1857 aa		33.18	■■■□□ 2.9
SNRPA1-215	ENST00000561187	NPM3	O75607	178 aa	Known RBP	33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	CYP2E1	P05181	493 aa	Predicted RBP	33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	FCGRT	P55899	365 aa		33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	TREML2	Q5T2D2	321 aa		33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	MAPKAPK5	Q8IW41	473 aa		33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	DBNL	Q9UJU6	430 aa	Known RBP	33.17	■■■□□ 2.9
SNRPA1-215	ENST00000561187	TBC1D12	O60347	775 aa		33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	GRK4	P32298	578 aa		33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	PIH1D3	Q9NQM4	214 aa	Known RBP	33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	BIN2	Q9UBW5	565 aa	Predicted RBP	33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	GABRQ	Q9UN88	632 aa		33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	COL2A1	P02458	1487 aa	Predicted RBP	33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	SIPA1L1	O43166	1804 aa		33.16	■■■□□ 2.9
SNRPA1-215	ENST00000561187	ZBTB7B	O15156	539 aa	Predicted RBP	33.15	■■■□□ 2.9
SNRPA1-215	ENST00000561187	SPP2	Q13103	211 aa		33.15	■■■□□ 2.9
SNRPA1-215	ENST00000561187	PANK1	Q8TE04	598 aa		33.15	■■■□□ 2.9
SNRPA1-215	ENST00000561187	TGFBRAP1	Q8WUH2	860 aa		33.15	■■■□□ 2.9
SNRPA1-215	ENST00000561187	NDUFB9	Q9Y6M9	179 aa		33.15	■■■□□ 2.9
SNRPA1-215	ENST00000561187	AGTPBP1	Q9UPW5	1226 aa		33.14	■■■□□ 2.9
SNRPA1-215	ENST00000561187	CDK5RAP2	Q96SN8	1893 aa		33.14	■■■□□ 2.9
SNRPA1-215	ENST00000561187	BAG3	O95817	575 aa		33.13	■■■□□ 2.89
SNRPA1-215	ENST00000561187	MAP4K4	O95819	1239 aa	Predicted RBP	33.13	■■■□□ 2.89
SNRPA1-215	ENST00000561187	FLT1	P17948	1338 aa		33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	HMGCS2	P54868	508 aa		33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	CEP85	Q6P2H3	762 aa		33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	ANKRD13C	Q8N6S4	541 aa		33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	EAF2	Q96CJ1	260 aa	Predicted RBP	33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	SAP30BP	Q9UHR5	308 aa	Known RBP	33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	EXOC6B	Q9Y2D4	811 aa		33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	NOP58	Q9Y2X3	529 aa	Known RBP	33.12	■■■□□ 2.89
SNRPA1-215	ENST00000561187	CAP2	P40123	477 aa		33.11	■■■□□ 2.89
SNRPA1-215	ENST00000561187	DYNLL1	P63167	89 aa	Known RBP	33.11	■■■□□ 2.89
SNRPA1-215	ENST00000561187	SHISA4	Q96DD7	197 aa		33.11	■■■□□ 2.89
SNRPA1-215	ENST00000561187	TAOK2	Q9UL54	1235 aa		33.11	■■■□□ 2.89
SNRPA1-215	ENST00000561187	SLC45A1	Q9Y2W3	748 aa		33.11	■■■□□ 2.89
SNRPA1-215	ENST00000561187	SHROOM1	Q2M3G4	852 aa	Predicted RBP	33.1	■■■□□ 2.89
SNRPA1-215	ENST00000561187	ZNF280C	Q8ND82	737 aa		33.1	■■■□□ 2.89
SNRPA1-215	ENST00000561187	LOC285556	D6RIA3	1793 aa		33.1	■■■□□ 2.89
SNRPA1-215	ENST00000561187	ZBED9	Q6R2W3	1325 aa		33.09	■■■□□ 2.89
SNRPA1-215	ENST00000561187	TNPO2	O14787	897 aa	Known RBP	33.09	■■■□□ 2.89
SNRPA1-215	ENST00000561187	IDH1	O75874	414 aa	Known RBP	33.09	■■■□□ 2.89
SNRPA1-215	ENST00000561187	PALD1	Q9ULE6	856 aa		33.09	■■■□□ 2.89
SNRPA1-215	ENST00000561187	CCL5	P13501	91 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	PLCG2	P16885	1265 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	CYP7A1	P22680	504 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	MIGA1	Q8NAN2	632 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	BCL11A	Q9H165	835 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	DNAJC18	Q9H819	358 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	PI4KB	Q9UBF8	816 aa		33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	HERC5	Q9UII4	1024 aa	Known RBP	33.08	■■■□□ 2.89
SNRPA1-215	ENST00000561187	FOCAD	Q5VW36	1801 aa		33.07	■■■□□ 2.89
SNRPA1-215	ENST00000561187	USP17L5	A8MUK1	530 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	GDF11	O95390	407 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	ELN	P15502	786 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	FLT3LG	P49771	235 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	TRIM34	Q9BYJ4	488 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	PNMA3	Q9UL41	463 aa		33.07	■■■□□ 2.88
SNRPA1-215	ENST00000561187	AACS	Q86V21	672 aa		33.06	■■■□□ 2.88
SNRPA1-215	ENST00000561187	ZNF512B	Q96KM6	892 aa	Predicted RBP	33.06	■■■□□ 2.88
SNRPA1-215	ENST00000561187	RNF208	Q9H0X6	261 aa		33.06	■■■□□ 2.88
SNRPA1-215	ENST00000561187	PPP4C	P60510	307 aa		33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	UBXN2A	P68543	259 aa		33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	JAG1	P78504	1218 aa		33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	MTMR2	Q13614	643 aa		33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	PROCA1	Q8NCQ7	364 aa	Predicted RBP	33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	DHX36	Q9H2U1	1008 aa	Known RBP	33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	CEP290	O15078	2479 aa		33.05	■■■□□ 2.88
SNRPA1-215	ENST00000561187	ADCY3	O60266	1144 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	MAGEB6	Q8N7X4	407 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	SLAIN1	Q8ND83	568 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	GCC1	Q96CN9	775 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	UNC93B1	Q9H1C4	597 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	ANTXR1	Q9H6X2	564 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	IL1RAPL2	Q9NP60	686 aa		33.04	■■■□□ 2.88
SNRPA1-215	ENST00000561187	APBB1	O00213	710 aa		33.03	■■■□□ 2.88
SNRPA1-215	ENST00000561187	AS3MT	Q9HBK9	375 aa		33.03	■■■□□ 2.88
SNRPA1-215	ENST00000561187	DOCK3	Q8IZD9	2030 aa		33.02	■■■□□ 2.88
SNRPA1-215	ENST00000561187	ASCC2	Q9H1I8	757 aa	Predicted RBP	33.02	■■■□□ 2.88
SNRPA1-215	ENST00000561187	FAM110C	Q1W6H9	321 aa		33.01	■■■□□ 2.87
SNRPA1-215	ENST00000561187	HABP4	Q5JVS0	413 aa	Known RBP	33.01	■■■□□ 2.87
SNRPA1-215	ENST00000561187	INHA	P05111	366 aa		33	■■■□□ 2.87
SNRPA1-215	ENST00000561187	TBC1D2	Q9BYX2	928 aa		33	■■■□□ 2.87
SNRPA1-215	ENST00000561187	HLA-DOA	P06340	250 aa		32.99	■■■□□ 2.87
SNRPA1-215	ENST00000561187	USP5	P45974	858 aa		32.99	■■■□□ 2.87
SNRPA1-215	ENST00000561187	COA7	Q96BR5	231 aa		32.99	■■■□□ 2.87
SNRPA1-215	ENST00000561187	MYH1	P12882	1939 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	PEX10	O60683	326 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	GJB1	P08034	283 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	ASNS	P08243	561 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	GJA8	P48165	433 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	PABPC4	Q13310	644 aa	Known RBP eCLIP	32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	ERC1	Q8IUD2	1116 aa		32.98	■■■□□ 2.87

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms