RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CCL5P13501 91 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 MECOMQ03112 1051 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 ZSCAN29Q8IWY8 852 aaPredicted RBP17.16■□□□□ 0.34
LDLR-213ENST00000560502 NKX2-3Q8TAU0 364 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 GABRQQ9UN88 632 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 AKAP2Q9Y2D5 859 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 CDK5RAP2Q96SN8 1893 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 TBC1D12O60347 775 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 GNAI3P08754 354 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 PICALMQ13492 652 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 GADL1Q6ZQY3 521 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 SLAIN1Q8ND83 568 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 HMG20BQ9P0W2 317 aa17.15■□□□□ 0.34
LDLR-213ENST00000560502 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
LDLR-213ENST00000560502 ERICH6Q7L0X2 663 aa17.14■□□□□ 0.33
LDLR-213ENST00000560502 PCDHB15Q9Y5E8 787 aa17.14■□□□□ 0.33
LDLR-213ENST00000560502 FOCADQ5VW36 1801 aa17.14■□□□□ 0.33
LDLR-213ENST00000560502 MAP4K4O95819 1239 aaPredicted RBP17.13■□□□□ 0.33
LDLR-213ENST00000560502 ARID4AP29374 1257 aaPredicted RBP17.13■□□□□ 0.33
LDLR-213ENST00000560502 UBXN2AP68543 259 aa17.13■□□□□ 0.33
LDLR-213ENST00000560502 IRF5Q13568 498 aa17.13■□□□□ 0.33
LDLR-213ENST00000560502 PI16Q6UXB8 463 aa17.13■□□□□ 0.33
LDLR-213ENST00000560502 CCDC84Q86UT8 332 aaPredicted RBP17.13■□□□□ 0.33
LDLR-213ENST00000560502 NSUN4Q96CB9 384 aaKnown RBP17.13■□□□□ 0.33
LDLR-213ENST00000560502 RNF208Q9H0X6 261 aa17.13■□□□□ 0.33
LDLR-213ENST00000560502 AGTPBP1Q9UPW5 1226 aa17.13■□□□□ 0.33
LDLR-213ENST00000560502 TRIM75PA6NK02 468 aa17.12■□□□□ 0.33
LDLR-213ENST00000560502 FLT3LGP49771 235 aa17.12■□□□□ 0.33
LDLR-213ENST00000560502 SPATA5Q8NB90 893 aa17.12■□□□□ 0.33
LDLR-213ENST00000560502 UNC93B1Q9H1C4 597 aa17.12■□□□□ 0.33
LDLR-213ENST00000560502 ALPK3Q96L96 1907 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 FAM196BA6NMK8 535 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 ADCY3O60266 1144 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 GSTO1P78417 241 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 TREML2Q5T2D2 321 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 PROCA1Q8NCQ7 364 aaPredicted RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 PXYLP1Q8TE99 480 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 SMCR8Q8TEV9 937 aaPredicted RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 U2AF1L4Q8WU68 220 aaKnown RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 NEUROD6Q96NK8 337 aa17.11■□□□□ 0.33
LDLR-213ENST00000560502 OSBPL5Q9H0X9 879 aaPredicted RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 BIN2Q9UBW5 565 aaPredicted RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 MYO5AQ9Y4I1 1855 aaKnown RBP17.11■□□□□ 0.33
LDLR-213ENST00000560502 PLXNB2O15031 1838 aa17.1■□□□□ 0.33
LDLR-213ENST00000560502 TNPO2O14787 897 aaKnown RBP17.1■□□□□ 0.33
LDLR-213ENST00000560502 LDHCP07864 332 aa17.1■□□□□ 0.33
LDLR-213ENST00000560502 ELNP15502 786 aa17.1■□□□□ 0.33
LDLR-213ENST00000560502 MCAMP43121 646 aa17.1■□□□□ 0.33
LDLR-213ENST00000560502 TBC1D9Q6ZT07 1266 aa17.1■□□□□ 0.33
LDLR-213ENST00000560502 RPAP2Q8IXW5 612 aaPredicted RBP17.1■□□□□ 0.33
LDLR-213ENST00000560502 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.1■□□□□ 0.33
LDLR-213ENST00000560502 PNMA6EA0A0J9YXQ4 647 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 FARP2O94887 1054 aaPredicted RBP17.09■□□□□ 0.33
LDLR-213ENST00000560502 SGPL1O95470 568 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 IGHDP01880 384 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 INHAP05111 366 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 RRP1BQ14684 758 aaKnown RBP17.09■□□□□ 0.33
LDLR-213ENST00000560502 FAM110CQ1W6H9 321 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 CHRDL2Q6WN34 429 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 ANKRD13CQ8N6S4 541 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 DPF3Q92784 378 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 HTATIP2Q9BUP3 242 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 PRO3102Q9H379 93 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 PNMA3Q9UL41 463 aa17.09■□□□□ 0.33
LDLR-213ENST00000560502 RANBP2P49792 3224 aaKnown RBP17.08■□□□□ 0.33
LDLR-213ENST00000560502 GNAI2P04899 355 aa17.08■□□□□ 0.32
LDLR-213ENST00000560502 CAP2P40123 477 aa17.08■□□□□ 0.32
LDLR-213ENST00000560502 SMC5Q8IY18 1101 aa17.08■□□□□ 0.32
LDLR-213ENST00000560502 ZNF280CQ8ND82 737 aa17.08■□□□□ 0.32
LDLR-213ENST00000560502 TBC1D2Q9BYX2 928 aa17.08■□□□□ 0.32
LDLR-213ENST00000560502 PAK6Q9NQU5 681 aaPredicted RBP17.08■□□□□ 0.32
LDLR-213ENST00000560502 UQCRFS1P1P0C7P4 283 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 CAPN2P17655 700 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 SPP2Q13103 211 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 GORABQ5T7V8 394 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 TEX11Q8IYF3 940 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 CRISPLD2Q9H0B8 497 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
LDLR-213ENST00000560502 RBM27Q9P2N5 1060 aaKnown RBP17.07■□□□□ 0.32
LDLR-213ENST00000560502 HMMRO75330 724 aa17.06■□□□□ 0.32
LDLR-213ENST00000560502 HMGCS2P54868 508 aa17.06■□□□□ 0.32
LDLR-213ENST00000560502 SH3D19Q5HYK7 790 aa17.06■□□□□ 0.32
LDLR-213ENST00000560502 SH3RF3Q8TEJ3 882 aaPredicted RBP17.06■□□□□ 0.32
LDLR-213ENST00000560502 COA7Q96BR5 231 aa17.06■□□□□ 0.32
LDLR-213ENST00000560502 GPR108Q9NPR9 543 aa17.06■□□□□ 0.32
LDLR-213ENST00000560502 HERC5Q9UII4 1024 aaKnown RBP17.06■□□□□ 0.32
LDLR-213ENST00000560502 USP17L5A8MUK1 530 aa17.05■□□□□ 0.32
LDLR-213ENST00000560502 GCLCP48506 637 aaPredicted RBP17.05■□□□□ 0.32
LDLR-213ENST00000560502 G3BP1Q13283 466 aaKnown RBP eCLIP17.05■□□□□ 0.32
LDLR-213ENST00000560502 DEFB118Q96PH6 123 aa17.05■□□□□ 0.32
LDLR-213ENST00000560502 PPP4CP60510 307 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 PABPC4Q13310 644 aaKnown RBP eCLIP17.04■□□□□ 0.32
LDLR-213ENST00000560502 POLA2Q14181 598 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 WDR18Q9BV38 432 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 ASCC2Q9H1I8 757 aaPredicted RBP17.04■□□□□ 0.32
LDLR-213ENST00000560502 DNAJC18Q9H819 358 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 LRP2BPQ9P2M1 347 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 PI4KBQ9UBF8 816 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 NR2E3Q9Y5X4 410 aa17.04■□□□□ 0.32
LDLR-213ENST00000560502 SZT2Q5T011 3432 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms