RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 ALG1Q9BT22 464 aa11.27□□□□□ -0.61
RTF1-206ENST00000560447 ARMT1Q9H993 441 aa11.27□□□□□ -0.61
RTF1-206ENST00000560447 BCL2L12Q9HB09 334 aa11.27□□□□□ -0.61
RTF1-206ENST00000560447 RTCBQ9Y3I0 505 aaKnown RBP11.27□□□□□ -0.61
RTF1-206ENST00000560447 SLC12A7Q9Y666 1083 aa11.27□□□□□ -0.61
RTF1-206ENST00000560447 NEDD4P46934 1319 aa11.27□□□□□ -0.61
RTF1-206ENST00000560447 TAF1P21675 1872 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 FAM237AA0A1B0GTK4 181 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 FAM177BA6PVY3 158 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 SPTLC2O15270 562 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 TPM2P07951 284 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 CYP7A1P22680 504 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 U2AF2P26368 475 aaKnown RBP eCLIP11.26□□□□□ -0.61
RTF1-206ENST00000560447 GTF2E1P29083 439 aaPredicted RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 CDC25BP30305 580 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 ME1P48163 572 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 SSRP1Q08945 709 aaKnown RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 SNW1Q13573 536 aaKnown RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 DHX8Q14562 1220 aaKnown RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 WTAPQ15007 396 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 SF3A1Q15459 793 aaKnown RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 ANO1Q5XXA6 986 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 SPTY2D1Q68D10 685 aaPredicted RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 SARM1Q6SZW1 724 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 NFXL1Q6ZNB6 911 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 ELOA2Q8IYF1 753 aaPredicted RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 TRIM22Q8IYM9 498 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 LCORLQ8N3X6 602 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 ESR2Q92731 530 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 MARVELD3Q96A59 401 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 NAT10Q9H0A0 1025 aaKnown RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 GPHNQ9NQX3 736 aaPredicted RBP11.26□□□□□ -0.61
RTF1-206ENST00000560447 ANO10Q9NW15 660 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 ZSWIM5Q9P217 1185 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 COL4A1P02462 1669 aa11.26□□□□□ -0.61
RTF1-206ENST00000560447 UBR3Q6ZT12 1888 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 UBAP1LF5GYI3 381 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 DEXIO95424 95 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 CALM1P0DP23 149 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 CALM2P0DP24 149 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 CALM3P0DP25 149 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 CMA1P23946 247 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 PPARAQ07869 468 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 SLC39A14Q15043 492 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 ANO6Q4KMQ2 910 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 TBC1D9BQ66K14 1250 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 C15orf52Q6ZUT6 534 aaKnown RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 VPS37DQ86XT2 251 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 FMR1NBQ8N0W7 255 aaPredicted RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 FSIP1Q8NA03 581 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 FAM84BQ96KN1 310 aaPredicted RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 BPIFA3Q9BQP9 254 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 RIOK1Q9BRS2 568 aaKnown RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 CBX8Q9HC52 389 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 ATP8A2Q9NTI2 1148 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 PCDHA7Q9UN72 937 aa11.25□□□□□ -0.61
RTF1-206ENST00000560447 COL1A1P02452 1464 aaPredicted RBP11.25□□□□□ -0.61
RTF1-206ENST00000560447 ORC4O43929 436 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 ONECUT3O60422 494 aaPredicted RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 ZNF165P49910 485 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 PIP4K2BP78356 416 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 SAFBQ15424 915 aaKnown RBP eCLIP11.24□□□□□ -0.61
RTF1-206ENST00000560447 RTN1Q16799 776 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 SBK1Q52WX2 424 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 KRT40Q6A162 431 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 PIBF1Q8WXW3 757 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 C8orf37Q96NL8 207 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 RNF26Q9BY78 433 aaPredicted RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 FOXP1Q9H334 677 aaPredicted RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 FAM217BQ9NTX9 383 aaPredicted RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 RBM28Q9NW13 759 aaKnown RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 RAI14Q9P0K7 980 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 CCNL1Q9UK58 526 aaPredicted RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 USP21Q9UK80 565 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 LEMD3Q9Y2U8 911 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 BAZ2AQ9UIF9 1905 aaKnown RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 MYH2Q9UKX2 1941 aa11.24□□□□□ -0.61
RTF1-206ENST00000560447 TNRC6CQ9HCJ0 1690 aaKnown RBP11.24□□□□□ -0.61
RTF1-206ENST00000560447 GOLGA6L19H0YKK7 550 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 DTNBO60941 627 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 SLC3A2P08195 630 aaKnown RBP11.23□□□□□ -0.61
RTF1-206ENST00000560447 XBP1P17861 261 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CDC27P30260 824 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 HIBADHP31937 336 aaKnown RBP11.23□□□□□ -0.61
RTF1-206ENST00000560447 RBM6P78332 1123 aaKnown RBP11.23□□□□□ -0.61
RTF1-206ENST00000560447 GUCY1B3Q02153 619 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CTDSPL2Q05D32 466 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 SEC23AQ15436 765 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CAMK4Q16566 473 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CCDC178Q5BJE1 867 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CKAP2LQ8IYA6 745 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CEP57L1Q8IYX8 460 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 FAM177A1Q8N128 213 aaPredicted RBP11.23□□□□□ -0.61
RTF1-206ENST00000560447 UBAC1Q9BSL1 405 aa11.23□□□□□ -0.61
RTF1-206ENST00000560447 CRNKL1Q9BZJ0 848 aaKnown RBP11.23□□□□□ -0.61
RTF1-206ENST00000560447 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.23□□□□□ -0.61
RTF1-206ENST00000560447 LRRC37AA6NMS7 1700 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms