RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 CYP7A1P22680 504 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 PPP4CP60510 307 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 GPAT2Q6NUI2 795 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 AACSQ86V21 672 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 ZNF280CQ8ND82 737 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 NKX2-3Q8TAU0 364 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 TMOD4Q9NZQ9 345 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 MYPNQ86TC9 1320 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 ATRNL1Q5VV63 1379 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 CYP2E1P05181 493 aaPredicted RBP15.32■□□□□ 0.04
SNX1-209ENST00000559961 RLBP1P12271 317 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 EN2P19622 333 aaPredicted RBP15.32■□□□□ 0.04
SNX1-209ENST00000559961 GRK4P32298 578 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 CAP2P40123 477 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 ZAP70P43403 619 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 USP5P45974 858 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 SPP2Q13103 211 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 TTF1Q15361 905 aaPredicted RBP15.32■□□□□ 0.04
SNX1-209ENST00000559961 CEP85Q6P2H3 762 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 MAPKAPK5Q8IW41 473 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 CLASRPQ8N2M8 674 aaKnown RBP15.32■□□□□ 0.04
SNX1-209ENST00000559961 PROCA1Q8NCQ7 364 aaPredicted RBP15.32■□□□□ 0.04
SNX1-209ENST00000559961 PANK1Q8TE04 598 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 SH3TC2Q8TF17 1288 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 COA7Q96BR5 231 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 GINM1Q9NU53 330 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 DDX19BQ9UMR2 479 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 AGTPBP1Q9UPW5 1226 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 OTOFQ9HC10 1997 aa15.32■□□□□ 0.04
SNX1-209ENST00000559961 TNPO2O14787 897 aaKnown RBP15.31■□□□□ 0.04
SNX1-209ENST00000559961 ASNSP08243 561 aa15.31■□□□□ 0.04
SNX1-209ENST00000559961 IFIT2P09913 472 aaKnown RBP15.31■□□□□ 0.04
SNX1-209ENST00000559961 GCLCP48506 637 aaPredicted RBP15.31■□□□□ 0.04
SNX1-209ENST00000559961 MOGSQ13724 837 aa15.31■□□□□ 0.04
SNX1-209ENST00000559961 RPAP2Q8IXW5 612 aaPredicted RBP15.31■□□□□ 0.04
SNX1-209ENST00000559961 BCL11AQ9H165 835 aa15.31■□□□□ 0.04
SNX1-209ENST00000559961 DBNLQ9UJU6 430 aaKnown RBP15.31■□□□□ 0.04
SNX1-209ENST00000559961 EXOC6BQ9Y2D4 811 aa15.31■□□□□ 0.04
SNX1-209ENST00000559961 FAM196BA6NMK8 535 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 BCRP11274 1271 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 RFX7Q2KHR2 1363 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 CCAR1Q8IX12 1150 aaKnown RBP15.3■□□□□ 0.04
SNX1-209ENST00000559961 SLAIN1Q8ND83 568 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 ZNF384Q8TF68 577 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 EAF2Q96CJ1 260 aaPredicted RBP15.3■□□□□ 0.04
SNX1-209ENST00000559961 TAOK2Q9UL54 1235 aa15.3■□□□□ 0.04
SNX1-209ENST00000559961 MYH2Q9UKX2 1941 aa15.29■□□□□ 0.04
SNX1-209ENST00000559961 COL2A1P02458 1487 aaPredicted RBP15.29■□□□□ 0.04
SNX1-209ENST00000559961 APBB1O00213 710 aa15.29■□□□□ 0.04
SNX1-209ENST00000559961 IRX3P78415 501 aaPredicted RBP15.29■□□□□ 0.04
SNX1-209ENST00000559961 TTC6Q86TZ1 520 aa15.29■□□□□ 0.04
SNX1-209ENST00000559961 MAGEB6Q8N7X4 407 aa15.29■□□□□ 0.04
SNX1-209ENST00000559961 KIF1BPQ96EK5 621 aa15.29■□□□□ 0.04
SNX1-209ENST00000559961 PIH1D3Q9NQM4 214 aaKnown RBP15.29■□□□□ 0.04
SNX1-209ENST00000559961 FLT1P17948 1338 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 C19orf81C9J6K1 198 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 RAB11FIP3O75154 756 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 HMGCS2P54868 508 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 CAP1Q01518 475 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 ANKRD13CQ8N6S4 541 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 RNF208Q9H0X6 261 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 SAP30BPQ9UHR5 308 aaKnown RBP15.28■□□□□ 0.04
SNX1-209ENST00000559961 PALD1Q9ULE6 856 aa15.28■□□□□ 0.04
SNX1-209ENST00000559961 LAMB1P07942 1786 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 ADGRA2Q96PE1 1338 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 CAPN2P17655 700 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 PRKCZQ05513 592 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 CCDC84Q86UT8 332 aaPredicted RBP15.27■□□□□ 0.04
SNX1-209ENST00000559961 MIGA1Q8NAN2 632 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 RHPN1Q8TCX5 695 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 WDR18Q9BV38 432 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 CWC22Q9HCG8 908 aaKnown RBP15.27■□□□□ 0.04
SNX1-209ENST00000559961 IL1RAPL2Q9NP60 686 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 CABP5Q9NP86 173 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 TLR7Q9NYK1 1049 aaKnown RBP15.27■□□□□ 0.04
SNX1-209ENST00000559961 RCAN3Q9UKA8 241 aa15.27■□□□□ 0.04
SNX1-209ENST00000559961 USP17L10C9JJH3 530 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 ADCY3O60266 1144 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 SLC34A2O95436 690 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 POLR3DP05423 398 aaPredicted RBP15.26■□□□□ 0.03
SNX1-209ENST00000559961 SLURP2P0DP57 97 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 BACE1P56817 501 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 FAM110CQ1W6H9 321 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 TREML2Q5T2D2 321 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 COG6Q9Y2V7 657 aa15.26■□□□□ 0.03
SNX1-209ENST00000559961 MAGEB6P1A0A0J9YX57 407 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 CCL5P13501 91 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 FLT3LGP49771 235 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 DYNLL1P63167 89 aaKnown RBP15.25■□□□□ 0.03
SNX1-209ENST00000559961 MTMR2Q13614 643 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 SH3D19Q5HYK7 790 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 SLC9C2Q5TAH2 1124 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 AMOTL1Q8IY63 956 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 PXYLP1Q8TE99 480 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 GTF3C2Q8WUA4 911 aaPredicted RBP15.25■□□□□ 0.03
SNX1-209ENST00000559961 DPF3Q92784 378 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 DNAJC2Q99543 621 aaKnown RBP15.25■□□□□ 0.03
SNX1-209ENST00000559961 FEZ1Q99689 392 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 HTATIP2Q9BUP3 242 aa15.25■□□□□ 0.03
SNX1-209ENST00000559961 CRNKL1Q9BZJ0 848 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms