RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CHRNDQ07001 517 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 TNNI3KQ59H18 835 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 DDX46Q7L014 1031 aaKnown RBP6.42□□□□□ -1.38
SPG11-220ENST00000559933 AACSQ86V21 672 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 VGLL2Q8N8G2 317 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 EAF2Q96CJ1 260 aaPredicted RBP6.42□□□□□ -1.38
SPG11-220ENST00000559933 DBNDD2Q9BQY9 259 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 TRIM34Q9BYJ4 488 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 PRM3Q9NNZ6 103 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 MINPP1Q9UNW1 487 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 HDAC5Q9UQL6 1122 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 RIPOR2Q9Y4F9 1068 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 PCDHB9Q9Y5E1 797 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 FPGT-TNNI3KV9GXZ4 949 aa6.42□□□□□ -1.38
SPG11-220ENST00000559933 BRCA1P38398 1863 aaKnown RBP6.42□□□□□ -1.38
SPG11-220ENST00000559933 UTRNP46939 3433 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 KLRG2A4D1S0 409 aaPredicted RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 SOBPA7XYQ1 873 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 CIAO1O76071 339 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 GSPT1P15170 499 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 NPR1P16066 1061 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 PDE6BP35913 854 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 IL15P40933 162 aaPredicted RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 VEGFBP49765 207 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 TIMM10P62072 90 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 RPS8P62241 208 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 CBLBQ13191 982 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 ATP2B3Q16720 1220 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 LCE2AQ5TA79 106 aaPredicted RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 PRPF40BQ6NWY9 871 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 PLEKHM2Q8IWE5 1019 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 KIF1BPQ96EK5 621 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 MASTLQ96GX5 879 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 RBM17Q96I25 401 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 CDC5LQ99459 802 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 MPHOSPH8Q99549 860 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 OCSTAMPQ9BR26 566 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 DBNLQ9UJU6 430 aaKnown RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 SALL3Q9BXA9 1300 aa6.41□□□□□ -1.38
SPG11-220ENST00000559933 COL1A1P02452 1464 aaPredicted RBP6.41□□□□□ -1.38
SPG11-220ENST00000559933 A0A1B0GUL7 405 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 TTLL8A6PVC2 850 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 H0YIN7 160 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 H3BM21 787 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 C21orf2O43822 256 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 RAB11FIP3O75154 756 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 HSP90B1P14625 803 aaKnown RBP6.4□□□□□ -1.38
SPG11-220ENST00000559933 HOXA10P31260 410 aaPredicted RBP6.4□□□□□ -1.38
SPG11-220ENST00000559933 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.4□□□□□ -1.38
SPG11-220ENST00000559933 PI16Q6UXB8 463 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 Q6ZVU0 165 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 TXNRD3Q86VQ6 643 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 EDC3Q96F86 508 aaKnown RBP6.4□□□□□ -1.38
SPG11-220ENST00000559933 NEUROD6Q96NK8 337 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 FHDC1Q9C0D6 1143 aaPredicted RBP6.4□□□□□ -1.38
SPG11-220ENST00000559933 SPON1Q9HCB6 807 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 BSDC1Q9NW68 430 aaPredicted RBP6.4□□□□□ -1.38
SPG11-220ENST00000559933 CEP126Q9P2H0 1117 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 JAG2Q9Y219 1238 aa6.4□□□□□ -1.38
SPG11-220ENST00000559933 SNED1Q8TER0 1413 aa6.4□□□□□ -1.39
SPG11-220ENST00000559933 COL4A5P29400 1685 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 WIPF1O43516 503 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 PDE8BO95263 885 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 CHGBP05060 677 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 IFIT2P09913 472 aaKnown RBP6.39□□□□□ -1.39
SPG11-220ENST00000559933 MX1P20591 662 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 FGFR2P21802 821 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 PHKA1P46020 1223 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 GYG1P46976 350 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 MCCD1P59942 119 aaPredicted RBP6.39□□□□□ -1.39
SPG11-220ENST00000559933 RELBQ01201 579 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 PUM3Q15397 648 aaKnown RBP6.39□□□□□ -1.39
SPG11-220ENST00000559933 HSP90AB4PQ58FF6 505 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 STYK1Q6J9G0 422 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 ERC1Q8IUD2 1116 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 CLASRPQ8N2M8 674 aaKnown RBP6.39□□□□□ -1.39
SPG11-220ENST00000559933 PI4K2BQ8TCG2 481 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 CRAMP1Q96RY5 1269 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 ANKIB1Q9P2G1 1089 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 POLLQ9UGP5 575 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 IQSEC3Q9UPP2 1182 aaPredicted RBP6.39□□□□□ -1.39
SPG11-220ENST00000559933 MROH5Q6ZUA9 1318 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 IRS2Q9Y4H2 1338 aa6.39□□□□□ -1.39
SPG11-220ENST00000559933 ERVH48-1M5A8F1 160 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 UFL1O94874 794 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 KCNJ4P48050 445 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 PDE1AP54750 535 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 RASSF7Q02833 373 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 NR1H3Q13133 447 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 SLFNL1Q499Z3 407 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 TTC22Q5TAA0 569 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 RNF20Q5VTR2 975 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 ZNF784Q8NCA9 323 aaPredicted RBP6.38□□□□□ -1.39
SPG11-220ENST00000559933 C7orf43Q8WVR3 580 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 XAGE2Q96GT9 111 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 AGBL1Q96MI9 1066 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 BOLA2Q9H3K6 86 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 POLMQ9NP87 494 aaPredicted RBP6.38□□□□□ -1.39
SPG11-220ENST00000559933 SNRKQ9NRH2 765 aa6.38□□□□□ -1.39
SPG11-220ENST00000559933 TMPRSS4Q9NRS4 437 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms