RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 PDE4BQ07343 736 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 FKBP1CQ5VVH2 108 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 Q6ZUG5 572 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 CYB5R4Q7L1T6 521 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 CHST3Q7LGC8 479 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 TTC6Q86TZ1 520 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 GPRC5DQ9NZD1 345 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 SIPA1L1O43166 1804 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 MYO1BO43795 1136 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 KDM4AO75164 1064 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 NBPF9Q3BBW0 867 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 ZFPM1Q8IX07 1006 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 LRRC2Q9BYS8 371 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 TOMM22Q9NS69 142 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 LIMCH1Q9UPQ0 1083 aa14.39□□□□□ -0.11
HERC1-205ENST00000559886 COL2A1P02458 1487 aaPredicted RBP14.39□□□□□ -0.11
HERC1-205ENST00000559886 ZC3H4Q9UPT8 1303 aaKnown RBP14.39□□□□□ -0.11
HERC1-205ENST00000559886 CLRN2A0PK11 232 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 H7C1D1 291 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 EGFRP00533 1210 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 TCP10Q12799 353 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 RRP12Q5JTH9 1297 aaKnown RBP14.38□□□□□ -0.11
HERC1-205ENST00000559886 C16orf86Q6ZW13 317 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 ESR2Q92731 530 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 DYNLL2Q96FJ2 89 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 TMX3Q96JJ7 454 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 DHX36Q9H2U1 1008 aaKnown RBP14.38□□□□□ -0.11
HERC1-205ENST00000559886 PRDM1O75626 825 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 DDNO94850 711 aaPredicted RBP14.38□□□□□ -0.11
HERC1-205ENST00000559886 NT5C2P49902 561 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 NOL8Q76FK4 1167 aaKnown RBP14.38□□□□□ -0.11
HERC1-205ENST00000559886 SAMD7Q7Z3H4 446 aa14.38□□□□□ -0.11
HERC1-205ENST00000559886 ATRNL1Q5VV63 1379 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 FGD1P98174 961 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 GABPAQ06546 454 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 RBM26Q5T8P6 1007 aaKnown RBP14.37□□□□□ -0.11
HERC1-205ENST00000559886 LARP6Q9BRS8 491 aaKnown RBP14.37□□□□□ -0.11
HERC1-205ENST00000559886 ZNF287Q9HBT7 754 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 TBC1D10BQ4KMP7 808 aaPredicted RBP14.37□□□□□ -0.11
HERC1-205ENST00000559886 SH3BP5LQ7L8J4 393 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 BRF1Q92994 677 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 TMEM87BQ96K49 555 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 MTA3Q9BTC8 594 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 EHD4Q9H223 541 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 TPCN1Q9ULQ1 816 aa14.37□□□□□ -0.11
HERC1-205ENST00000559886 DDTLA6NHG4 134 aaPredicted RBP14.36□□□□□ -0.11
HERC1-205ENST00000559886 TCP10L2B9ZVM9 353 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 HLA-DOAP06340 250 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 CDK8P49336 464 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 KIF4BQ2VIQ3 1234 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 SLC44A5Q8NCS7 719 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 IGDCC4Q8TDY8 1250 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 ZSCAN31Q96LW9 406 aaPredicted RBP14.36□□□□□ -0.11
HERC1-205ENST00000559886 MKNK2Q9HBH9 465 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 SERPINB13Q9UIV8 391 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 CNTNAP1P78357 1384 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 RANBP6O60518 1105 aaKnown RBP14.36□□□□□ -0.11
HERC1-205ENST00000559886 DPY19L2Q6NUT2 758 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 FAM83AQ86UY5 434 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 FAM151AQ8WW52 585 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 VEZTQ9HBM0 779 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 GPHNQ9NQX3 736 aaPredicted RBP14.36□□□□□ -0.11
HERC1-205ENST00000559886 PI4KBQ9UBF8 816 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 TAOK2Q9UL54 1235 aa14.36□□□□□ -0.11
HERC1-205ENST00000559886 EPS15P42566 896 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 EVCP57679 992 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 ZSCAN29Q8IWY8 852 aaPredicted RBP14.35□□□□□ -0.11
HERC1-205ENST00000559886 SH2B1Q9NRF2 756 aaPredicted RBP14.35□□□□□ -0.11
HERC1-205ENST00000559886 ANGEL1Q9UNK9 670 aaKnown RBP14.35□□□□□ -0.11
HERC1-205ENST00000559886 SH2B2O14492 632 aaPredicted RBP14.35□□□□□ -0.11
HERC1-205ENST00000559886 RASA1P20936 1047 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 CUL4AQ13619 759 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 ME3Q16798 604 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 SWAP70Q9UH65 585 aa14.35□□□□□ -0.11
HERC1-205ENST00000559886 IFIT3O14879 490 aaKnown RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 LARGE1O95461 756 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 SART3Q15020 963 aaKnown RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 METTL16Q86W50 562 aaKnown RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 ZNF444Q8N0Y2 327 aaPredicted RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 L3MBTL3Q96JM7 780 aaPredicted RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 LMOD1P29536 600 aaPredicted RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 LIFRP42702 1097 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 APOBRQ0VD83 1088 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 TMEM67Q5HYA8 995 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 FAM47AQ5JRC9 791 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 IQCA1Q86XH1 822 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 FOXP4Q8IVH2 680 aaPredicted RBP14.34□□□□□ -0.11
HERC1-205ENST00000559886 TRPM4Q8TD43 1214 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 ZKSCAN3Q9BRR0 538 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 UBAC1Q9BSL1 405 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 LY9Q9HBG7 655 aa14.34□□□□□ -0.11
HERC1-205ENST00000559886 POLR2AP24928 1970 aaKnown RBP14.33□□□□□ -0.11
HERC1-205ENST00000559886 TSPY2A6NKD2 308 aa14.33□□□□□ -0.12
HERC1-205ENST00000559886 TFAP4Q01664 338 aa14.33□□□□□ -0.12
HERC1-205ENST00000559886 SGMS1Q86VZ5 419 aa14.33□□□□□ -0.12
HERC1-205ENST00000559886 ZNF274Q96GC6 653 aaPredicted RBP14.33□□□□□ -0.12
HERC1-205ENST00000559886 ZSCAN10Q96SZ4 725 aaPredicted RBP14.33□□□□□ -0.12
HERC1-205ENST00000559886 GLTPD2A6NH11 291 aa14.33□□□□□ -0.12
HERC1-205ENST00000559886 HSP90AA1P07900 732 aaKnown RBP14.33□□□□□ -0.12
HERC1-205ENST00000559886 TNNI2P48788 182 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms