RNA–Protein interactions for RNA: ENST00000559831.5

TPM1-221, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-221ENST00000559831 ROBO3Q96MS0 1386 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 DDTLA6NHG4 134 aaPredicted RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 B4E1Z4 1266 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 PRDM1O75626 825 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 BLOC1S2Q6QNY1 142 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 USP50Q70EL3 339 aaPredicted RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 SH3BP5LQ7L8J4 393 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 APOBEC3FQ8IUX4 373 aaKnown RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 CRACR2BQ8N4Y2 399 aaPredicted RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 NCOA7Q8NI08 942 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 ZNF526Q8TF50 670 aaPredicted RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 TMEM39BQ9GZU3 492 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 DHX36Q9H2U1 1008 aaKnown RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 TAF1DQ9H5J8 278 aaPredicted RBP12.35□□□□□ -0.43
TPM1-221ENST00000559831 CYP46A1Q9Y6A2 500 aa12.35□□□□□ -0.43
TPM1-221ENST00000559831 ANP32AP39687 249 aaKnown RBP12.34□□□□□ -0.43
TPM1-221ENST00000559831 NEK4P51957 841 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 PDE4BQ07343 736 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 RASA3Q14644 834 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 FAM83AQ86UY5 434 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 SLC44A5Q8NCS7 719 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 IL17RAQ96F46 866 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 TCEANC2Q96MN5 208 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 CSRNP1Q96S65 589 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 TM6SF1Q9BZW5 370 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 KRT23Q9C075 422 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 CNNM2Q9H8M5 875 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 RRAGCQ9HB90 399 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 MKNK2Q9HBH9 465 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 ZSWIM6Q9HCJ5 1215 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 PI4KBQ9UBF8 816 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 UTRNP46939 3433 aa12.34□□□□□ -0.43
TPM1-221ENST00000559831 ATRNL1Q5VV63 1379 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 POTECB2RU33 542 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 RANBP6O60518 1105 aaKnown RBP12.33□□□□□ -0.44
TPM1-221ENST00000559831 KDM4AO75164 1064 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 SLURP2P0DP57 97 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 RPS6KB1P23443 525 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 CDK8P49336 464 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 COL9A3Q14050 684 aaPredicted RBP12.33□□□□□ -0.44
TPM1-221ENST00000559831 C16orf86Q6ZW13 317 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 RUFY3Q7L099 469 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 CHST3Q7LGC8 479 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 CDAN1Q8IWY9 1227 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 MB21D2Q8IYB1 491 aaPredicted RBP12.33□□□□□ -0.44
TPM1-221ENST00000559831 DCPSQ96C86 337 aaKnown RBP12.33□□□□□ -0.44
TPM1-221ENST00000559831 DEFB129Q9H1M3 183 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 PDRG1Q9NUG6 133 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 SERPINB13Q9UIV8 391 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 CLEC11AQ9Y240 323 aa12.33□□□□□ -0.44
TPM1-221ENST00000559831 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.33□□□□□ -0.44
TPM1-221ENST00000559831 ATAD5Q96QE3 1844 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 FAM196BA6NMK8 535 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 ORC4O43929 436 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 ST18O60284 1047 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 HMGB1P09429 215 aaKnown RBP12.32□□□□□ -0.44
TPM1-221ENST00000559831 PCP11498 1178 aaKnown RBP12.32□□□□□ -0.44
TPM1-221ENST00000559831 MCM5P33992 734 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 FGD1P98174 961 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 FAM47AQ5JRC9 791 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 NOL8Q76FK4 1167 aaKnown RBP12.32□□□□□ -0.44
TPM1-221ENST00000559831 CYB5R4Q7L1T6 521 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 DHX32Q7L7V1 743 aaKnown RBP12.32□□□□□ -0.44
TPM1-221ENST00000559831 NKX2-3Q8TAU0 364 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 ESR2Q92731 530 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 LRRC2Q9BYS8 371 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 EHD4Q9H223 541 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 ZNF287Q9HBT7 754 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 SWAP70Q9UH65 585 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 PITPNM2Q9BZ72 1349 aa12.32□□□□□ -0.44
TPM1-221ENST00000559831 PRC1O43663 620 aa12.31□□□□□ -0.44
TPM1-221ENST00000559831 FGRP09769 529 aa12.31□□□□□ -0.44
TPM1-221ENST00000559831 VEGFAP15692 232 aaPredicted RBP12.31□□□□□ -0.44
TPM1-221ENST00000559831 GABPAQ06546 454 aa12.31□□□□□ -0.44
TPM1-221ENST00000559831 PNMA8AQ86V59 439 aaPredicted RBP12.31□□□□□ -0.44
TPM1-221ENST00000559831 FOXP4Q8IVH2 680 aaPredicted RBP12.31□□□□□ -0.44
TPM1-221ENST00000559831 SULF1Q8IWU6 871 aa12.31□□□□□ -0.44
TPM1-221ENST00000559831 ZNF444Q8N0Y2 327 aaPredicted RBP12.31□□□□□ -0.44
TPM1-221ENST00000559831 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.31□□□□□ -0.44
TPM1-221ENST00000559831 NMRK2Q9NPI5 230 aa12.31□□□□□ -0.44
TPM1-221ENST00000559831 TSPY2A6NKD2 308 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 ADM5C9JUS6 153 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 RASA1P20936 1047 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 SHMT1P34896 483 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 ANTXR2P58335 489 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 TFAP4Q01664 338 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 NBPF12Q5TAG4 269 aaPredicted RBP12.3□□□□□ -0.44
TPM1-221ENST00000559831 PRAMEF18Q5VWM3 479 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 Q6ZUG5 572 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 MIGA2Q7L4E1 593 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 KRT26Q7Z3Y9 468 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 ZC3H15Q8WU90 426 aaKnown RBP12.3□□□□□ -0.44
TPM1-221ENST00000559831 TEPSINQ96N21 525 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 ZKSCAN3Q9BRR0 538 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 DNAJC18Q9H819 358 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 ZSWIM5Q9P217 1185 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 PGAP2Q9UHJ9 254 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 PPP2R3BQ9Y5P8 575 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 MYH4Q9Y623 1939 aa12.3□□□□□ -0.44
TPM1-221ENST00000559831 GREB1LQ9C091 1923 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms