RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SNRKQ9NRH2 765 aa14.33□□□□□ -0.12
USP3-214ENST00000559718 SRRDQ9UH36 339 aa14.33□□□□□ -0.12
USP3-214ENST00000559718 PHIPQ8WWQ0 1821 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 DOCK1Q14185 1865 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 TRIM75PA6NK02 468 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 UQCRFS1P1P0C7P4 283 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 RLBP1P12271 317 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 PRMT2P55345 433 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 GSTO1P78417 241 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 ATP8B2P98198 1209 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 MTFR1Q15390 333 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 TNNI3KQ59H18 835 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 FASTKD5Q7L8L6 764 aaKnown RBP14.32□□□□□ -0.12
USP3-214ENST00000559718 DBNDD2Q9BQY9 259 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP3-214ENST00000559718 LRP2BPQ9P2M1 347 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 FPGT-TNNI3KV9GXZ4 949 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 PTPRFP10586 1907 aa14.32□□□□□ -0.12
USP3-214ENST00000559718 GALR2O43603 387 aaPredicted RBP14.31□□□□□ -0.12
USP3-214ENST00000559718 TBC1D12O60347 775 aa14.31□□□□□ -0.12
USP3-214ENST00000559718 SURF6O75683 361 aaKnown RBP14.31□□□□□ -0.12
USP3-214ENST00000559718 LDHCP07864 332 aa14.31□□□□□ -0.12
USP3-214ENST00000559718 RRP1BQ14684 758 aaKnown RBP14.31□□□□□ -0.12
USP3-214ENST00000559718 SSH3Q8TE77 659 aa14.31□□□□□ -0.12
USP3-214ENST00000559718 SH3RF3Q8TEJ3 882 aaPredicted RBP14.31□□□□□ -0.12
USP3-214ENST00000559718 OSBPL5Q9H0X9 879 aaPredicted RBP14.31□□□□□ -0.12
USP3-214ENST00000559718 MYPNQ86TC9 1320 aa14.31□□□□□ -0.12
USP3-214ENST00000559718 HOXD10P28358 340 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 PRKCZQ05513 592 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 OS9Q13438 667 aaPredicted RBP14.3□□□□□ -0.12
USP3-214ENST00000559718 TTC39AQ5SRH9 613 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 ADGRA1Q86SQ6 560 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 ITPRIPQ8IWB1 547 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 TEX11Q8IYF3 940 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 RAET1EQ8TD07 263 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 GPR108Q9NPR9 543 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 GABRQQ9UN88 632 aa14.3□□□□□ -0.12
USP3-214ENST00000559718 CYP2E1P05181 493 aaPredicted RBP14.29□□□□□ -0.12
USP3-214ENST00000559718 GRK4P32298 578 aa14.29□□□□□ -0.12
USP3-214ENST00000559718 FCGRTP55899 365 aa14.29□□□□□ -0.12
USP3-214ENST00000559718 TREML2Q5T2D2 321 aa14.29□□□□□ -0.12
USP3-214ENST00000559718 NAA16Q6N069 864 aaPredicted RBP14.29□□□□□ -0.12
USP3-214ENST00000559718 FTSJ3Q8IY81 847 aaKnown RBP14.29□□□□□ -0.12
USP3-214ENST00000559718 SHISA4Q96DD7 197 aa14.29□□□□□ -0.12
USP3-214ENST00000559718 AATFQ9NY61 560 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP3-214ENST00000559718 TLR7Q9NYK1 1049 aaKnown RBP14.29□□□□□ -0.12
USP3-214ENST00000559718 ZBTB7BO15156 539 aaPredicted RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 MGAMO43451 1857 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 MAP4K4O95819 1239 aaPredicted RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 COL2A1P02458 1487 aaPredicted RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 ZAP70P43403 619 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 SPP2Q13103 211 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 CCDC158Q5M9N0 1113 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 SMCR8Q8TEV9 937 aaPredicted RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 PIH1D3Q9NQM4 214 aaKnown RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 DBNLQ9UJU6 430 aaKnown RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 AGTPBP1Q9UPW5 1226 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 SLC45A1Q9Y2W3 748 aa14.28□□□□□ -0.12
USP3-214ENST00000559718 NOP58Q9Y2X3 529 aaKnown RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 MYO5AQ9Y4I1 1855 aaKnown RBP14.28□□□□□ -0.12
USP3-214ENST00000559718 CAP2P40123 477 aa14.27□□□□□ -0.13
USP3-214ENST00000559718 MAPKAPK5Q8IW41 473 aa14.27□□□□□ -0.13
USP3-214ENST00000559718 ANKRD13CQ8N6S4 541 aa14.27□□□□□ -0.13
USP3-214ENST00000559718 TGFBRAP1Q8WUH2 860 aa14.27□□□□□ -0.13
USP3-214ENST00000559718 CCDC8Q9H0W5 538 aaPredicted RBP14.27□□□□□ -0.13
USP3-214ENST00000559718 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.13
USP3-214ENST00000559718 SIPA1L1O43166 1804 aa14.27□□□□□ -0.13
USP3-214ENST00000559718 CCL5P13501 91 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 FLT3LGP49771 235 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 HMGCS2P54868 508 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 JAG1P78504 1218 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 SHROOM1Q2M3G4 852 aaPredicted RBP14.26□□□□□ -0.13
USP3-214ENST00000559718 HABP4Q5JVS0 413 aaKnown RBP14.26□□□□□ -0.13
USP3-214ENST00000559718 LHX8Q68G74 356 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 PLCD3Q8N3E9 789 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 ZNF280CQ8ND82 737 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 EAF2Q96CJ1 260 aaPredicted RBP14.26□□□□□ -0.13
USP3-214ENST00000559718 NOL10Q9BSC4 688 aaKnown RBP14.26□□□□□ -0.13
USP3-214ENST00000559718 TSPYL2Q9H2G4 693 aaPredicted RBP14.26□□□□□ -0.13
USP3-214ENST00000559718 DNAJC18Q9H819 358 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 NDUFB9Q9Y6M9 179 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 ATAD5Q96QE3 1844 aa14.26□□□□□ -0.13
USP3-214ENST00000559718 DOCK3Q8IZD9 2030 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 MAST2Q6P0Q8 1798 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 FLT1P17948 1338 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 BAG3O95817 575 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 ELNP15502 786 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 PPP4CP60510 307 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 DYNLL1P63167 89 aaKnown RBP14.25□□□□□ -0.13
USP3-214ENST00000559718 CEP85Q6P2H3 762 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 PANK1Q8TE04 598 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 GCC1Q96CN9 775 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 ZNF512BQ96KM6 892 aaPredicted RBP14.25□□□□□ -0.13
USP3-214ENST00000559718 RNF208Q9H0X6 261 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 PI4KBQ9UBF8 816 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 HERC5Q9UII4 1024 aaKnown RBP14.25□□□□□ -0.13
USP3-214ENST00000559718 PALD1Q9ULE6 856 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 CDK5RAP2Q96SN8 1893 aa14.25□□□□□ -0.13
USP3-214ENST00000559718 USP17L5A8MUK1 530 aa14.24□□□□□ -0.13
USP3-214ENST00000559718 TNPO2O14787 897 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms