RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 TRIM6-TRIM34B2RNG4 842 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 TBC1D12O60347 775 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 NF2P35240 595 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 GABPAQ06546 454 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 TTLL12Q14166 644 aaPredicted RBP13.78□□□□□ -0.2
SNX1-204ENST00000559061 VPS53Q5VIR6 699 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 ARMC9Q7Z3E5 817 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 CERS3Q8IU89 383 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 JMYQ8N9B5 988 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 ZKSCAN4Q969J2 545 aaPredicted RBP13.78□□□□□ -0.2
SNX1-204ENST00000559061 RILPL2Q969X0 211 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 CRNKL1Q9BZJ0 848 aaKnown RBP13.78□□□□□ -0.2
SNX1-204ENST00000559061 WDR33Q9C0J8 1336 aaKnown RBP13.78□□□□□ -0.2
SNX1-204ENST00000559061 LAMA4Q16363 1823 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 MYH8P13535 1937 aa13.78□□□□□ -0.2
SNX1-204ENST00000559061 USP5P45974 858 aa13.77□□□□□ -0.21
SNX1-204ENST00000559061 ZSCAN29Q8IWY8 852 aaPredicted RBP13.77□□□□□ -0.21
SNX1-204ENST00000559061 AIDAQ96BJ3 306 aa13.77□□□□□ -0.21
SNX1-204ENST00000559061 WRNIP1Q96S55 665 aa13.77□□□□□ -0.21
SNX1-204ENST00000559061 ZNF341Q9BYN7 854 aa13.77□□□□□ -0.21
SNX1-204ENST00000559061 SLC4A4Q9Y6R1 1079 aa13.77□□□□□ -0.21
SNX1-204ENST00000559061 PPP1R12BO60237 982 aaPredicted RBP13.76□□□□□ -0.21
SNX1-204ENST00000559061 IREB2P48200 963 aaKnown RBP13.76□□□□□ -0.21
SNX1-204ENST00000559061 ZNF157P51786 506 aaPredicted RBP13.76□□□□□ -0.21
SNX1-204ENST00000559061 MAP3K9P80192 1104 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 NOL9Q5SY16 702 aaKnown RBP13.76□□□□□ -0.21
SNX1-204ENST00000559061 CTR9Q6PD62 1173 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 SLC44A5Q8NCS7 719 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 WNK4Q96J92 1243 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 EHD4Q9H223 541 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 ELP3Q9H9T3 547 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 TACC3Q9Y6A5 838 aa13.76□□□□□ -0.21
SNX1-204ENST00000559061 ROBO3Q96MS0 1386 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 SHMT1P34896 483 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 SPRYD7Q5W111 196 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 DCAF15Q66K64 600 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 CCDC84Q86UT8 332 aaPredicted RBP13.75□□□□□ -0.21
SNX1-204ENST00000559061 TICAM2Q86XR7 235 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 ANKRD13AQ8IZ07 590 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 DYNLL2Q96FJ2 89 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 DHX36Q9H2U1 1008 aaKnown RBP13.75□□□□□ -0.21
SNX1-204ENST00000559061 HELLSQ9NRZ9 838 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 ATP8A2Q9NTI2 1148 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 MCM9Q9NXL9 1143 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 PI4KBQ9UBF8 816 aa13.75□□□□□ -0.21
SNX1-204ENST00000559061 LOC285556D6RIA3 1793 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 SPDYE5A6NIY4 337 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 UNCXA6NJT0 531 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 USP17L12C9JPN9 530 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 USP17L21D6R901 530 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 CHMLP26374 656 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 MKRN3Q13064 507 aaKnown RBP13.74□□□□□ -0.21
SNX1-204ENST00000559061 GRM1Q13255 1194 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 C12orf60Q5U649 245 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 TATDN1Q6P1N9 297 aa13.74□□□□□ -0.21
SNX1-204ENST00000559061 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.74□□□□□ -0.21
SNX1-204ENST00000559061 CCDC171Q6TFL3 1326 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 GUCY1A2P33402 732 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 MOGSQ13724 837 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 MCMDC2Q4G0Z9 681 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 SBK1Q52WX2 424 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 BMP2KLQ5H9B9 411 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 CWC27Q6UX04 472 aaKnown RBP13.73□□□□□ -0.21
SNX1-204ENST00000559061 PAXIP1Q6ZW49 1069 aaPredicted RBP13.73□□□□□ -0.21
SNX1-204ENST00000559061 SCYL3Q8IZE3 742 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 IFNL3Q8IZI9 196 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 NKX2-3Q8TAU0 364 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 OPTNQ96CV9 577 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 HOOK2Q96ED9 719 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 MS4A4AQ96JQ5 239 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 NBPF3Q9H094 633 aa13.73□□□□□ -0.21
SNX1-204ENST00000559061 HERC5Q9UII4 1024 aaKnown RBP13.73□□□□□ -0.21
SNX1-204ENST00000559061 PATL2C9JE40 543 aaKnown RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 HSPD1P10809 573 aaKnown RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 PTPRAP18433 802 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 CAP2P40123 477 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 ECE1P42892 770 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 KIF23Q02241 960 aaPredicted RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 LRRFIP1Q32MZ4 808 aaKnown RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 GIMAP6Q6P9H5 292 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 FOXP4Q8IVH2 680 aaPredicted RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 CCDC102AQ96A19 550 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.72□□□□□ -0.21
SNX1-204ENST00000559061 SERPINB13Q9UIV8 391 aa13.72□□□□□ -0.21
SNX1-204ENST00000559061 IRF6O14896 467 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 CTNND1O60716 968 aaKnown RBP13.71□□□□□ -0.21
SNX1-204ENST00000559061 GDF11O95390 407 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 GNAT2P19087 354 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 NOGQ13253 232 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 C16orf86Q6ZW13 317 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 SLC10A4Q96EP9 437 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 OTUD5Q96G74 571 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 PTPN18Q99952 460 aa13.71□□□□□ -0.21
SNX1-204ENST00000559061 POLR3DP05423 398 aaPredicted RBP13.7□□□□□ -0.22
SNX1-204ENST00000559061 HLA-DOAP06340 250 aa13.7□□□□□ -0.22
SNX1-204ENST00000559061 ZBTB48P10074 688 aaPredicted RBP13.7□□□□□ -0.22
SNX1-204ENST00000559061 MAP2K2P36507 400 aa13.7□□□□□ -0.22
SNX1-204ENST00000559061 CACNB1Q02641 598 aaPredicted RBP13.7□□□□□ -0.22
SNX1-204ENST00000559061 ALX1Q15699 326 aa13.7□□□□□ -0.22
SNX1-204ENST00000559061 TTC6Q86TZ1 520 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms