RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZNF438Q7Z4V0 828 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 ASAP3Q8TDY4 903 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 HRASLS5Q96KN8 279 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 DIRC2Q96SL1 478 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 TRIM56Q9BRZ2 755 aaKnown RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 BHLHE41Q9C0J9 482 aaPredicted RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 TNKS2Q9H2K2 1166 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 LATS2Q9NRM7 1088 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 VTI1BQ9UEU0 232 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 EREGO14944 169 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 SORBS3O60504 671 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 TNFRSF21O75509 655 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 FANCCQ00597 558 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 ATP2B2Q01814 1243 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 RAD51AP2Q09MP3 1159 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 METTL16Q86W50 562 aaKnown RBP2.65□□□□□ -1.99
USP3-209ENST00000558925 TMEM87AQ8NBN3 555 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 EPS8L3Q8TE67 593 aaKnown RBP2.65□□□□□ -1.99
USP3-209ENST00000558925 WDR18Q9BV38 432 aa2.65□□□□□ -1.99
USP3-209ENST00000558925 NSUN3Q9H649 340 aaKnown RBP2.65□□□□□ -1.99
USP3-209ENST00000558925 RBAK-RBAKDNI3L0D1 243 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 ETV2O00321 342 aaPredicted RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 SCAMP3O14828 347 aaKnown RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 AOC2O75106 756 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 CPNE3O75131 537 aaKnown RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 MED14OSP0DP75 135 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 PCSK2P16519 638 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 ITIH2P19823 946 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 ERCC5P28715 1186 aaPredicted RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 GNA15P30679 374 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 USP5P45974 858 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 ZP2Q05996 745 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 SKOR2Q2VWA4 1001 aaPredicted RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 LARP7Q4G0J3 582 aaKnown RBP eCLIP2.64□□□□□ -1.99
USP3-209ENST00000558925 MEI1Q5TIA1 1274 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 ALG1LQ6GMV1 187 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 MPZL3Q6UWV2 235 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 XKR5Q6UX68 686 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 DBX2Q6ZNG2 339 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 FAM214BQ7L5A3 538 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 FBXO15Q8NCQ5 510 aaPredicted RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 WDR89Q96FK6 387 aaPredicted RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 KIRREL1Q96J84 757 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 HEXIM2Q96MH2 286 aaKnown RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 DUSP23Q9BVJ7 150 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 OSBPL7Q9BZF2 842 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 MKNK2Q9HBH9 465 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 MRS2Q9HD23 443 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 NPHS2Q9NP85 383 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 PARD6AQ9NPB6 346 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 FAM13BQ9NYF5 915 aa2.64□□□□□ -1.99
USP3-209ENST00000558925 SMG5Q9UPR3 1016 aaKnown RBP2.64□□□□□ -1.99
USP3-209ENST00000558925 TMEM265A0A087WTH1 108 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 TMPRSS2O15393 492 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 NUAK1O60285 661 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 PHACTR2O75167 634 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 TNNI2P48788 182 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 LINC00310P59036 64 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 IKZF1Q13422 519 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 POU4F3Q15319 338 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 NAALADL2Q58DX5 795 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 CIAPIN1Q6FI81 312 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 NXPE4Q6UWF7 544 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 NT5DC4Q86YG4 428 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 SPACA3Q8IXA5 215 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 TTC16Q8NEE8 873 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 SNX29Q8TEQ0 813 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 FBF1Q8TES7 1133 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 CCDC74AQ96AQ1 378 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 KCNC2Q96PR1 638 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 IRF2BPLQ9H1B7 796 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 TMPRSS5Q9H3S3 457 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 ZFYVE28Q9HCC9 887 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 PCDHGB7Q9Y5F8 929 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 AK5Q9Y6K8 562 aa2.63□□□□□ -1.99
USP3-209ENST00000558925 GADD45BO75293 160 aaPredicted RBP2.62□□□□□ -1.99
USP3-209ENST00000558925 USP17L7P0C7H9 530 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 TMEM253P0C7T8 217 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 BMP7P18075 431 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 AFMP43652 599 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 GRIA4P48058 902 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 ZC3H6P61129 1189 aaKnown RBP2.62□□□□□ -1.99
USP3-209ENST00000558925 PCDH1Q08174 1060 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 NKPD1Q17RQ9 610 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 SPRED3Q2MJR0 410 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 ZNF394Q53GI3 561 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 TMEM67Q5HYA8 995 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 CRELD1Q96HD1 420 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 C8orf37Q96NL8 207 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 DNAJC25Q9H1X3 360 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 ACBD3Q9H3P7 528 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 C12orf49Q9H741 205 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 RAD18Q9NS91 495 aa2.62□□□□□ -1.99
USP3-209ENST00000558925 TCAF2A6NFQ2 919 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 F6X3S4 739 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 FBXO24O75426 580 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 CYP11A1P05108 521 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 RPLP1P05386 114 aaKnown RBP2.61□□□□□ -1.99
USP3-209ENST00000558925 SYN1P17600 705 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 GLDCP23378 1020 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms