RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SLC16A10Q8TF71 515 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 IFT43Q96FT9 208 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 NOC4LQ9BVI4 516 aaKnown RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 SPC25Q9HBM1 224 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 TMOD3Q9NYL9 352 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 DBF4Q9UBU7 674 aaPredicted RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 NOB1Q9ULX3 412 aaKnown RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 ERBB4Q15303 1308 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 PDE4DIPQ5VU43 2346 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 POTECB2RU33 542 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 EML1O00423 815 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 TLL1O43897 1013 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 DDX58O95786 925 aaKnown RBP6.35□□□□□ -1.39
LDLR-209ENST00000558528 POLD1P28340 1107 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 FSTL1Q12841 308 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 PLEKHG4Q58EX7 1191 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 ALDH16A1Q8IZ83 802 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 TSPYL6Q8N831 410 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 SP7Q8TDD2 431 aaPredicted RBP6.35□□□□□ -1.39
LDLR-209ENST00000558528 XAGE2Q96GT9 111 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 TRIM55Q9BYV6 548 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 HYPKQ9NX55 129 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 MIS18AQ9NYP9 233 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 QSER1Q2KHR3 1735 aa6.35□□□□□ -1.39
LDLR-209ENST00000558528 FAM208AQ9UK61 1670 aaKnown RBP6.35□□□□□ -1.39
LDLR-209ENST00000558528 OPLAHO14841 1288 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 PLIN1O60240 522 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 CCT4P50991 539 aaKnown RBP6.34□□□□□ -1.39
LDLR-209ENST00000558528 LSM11P83369 360 aaKnown RBP eCLIP6.34□□□□□ -1.39
LDLR-209ENST00000558528 MVPQ14764 893 aaKnown RBP6.34□□□□□ -1.39
LDLR-209ENST00000558528 TLR1Q15399 786 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 C8orf34Q49A92 452 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 TBCELQ5QJ74 424 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 C1orf53Q5VUE5 145 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 FILIP1Q7Z7B0 1213 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 KIAA0825Q8IV33 1275 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 SNX29Q8TEQ0 813 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 SMARCC1Q92922 1105 aaPredicted RBP6.34□□□□□ -1.39
LDLR-209ENST00000558528 PSMD1Q99460 953 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 PRDM10Q9NQV6 1147 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 WBP1LQ9NX94 342 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 FCF1Q9Y324 198 aaKnown RBP6.34□□□□□ -1.39
LDLR-209ENST00000558528 MEGF6O75095 1541 aa6.34□□□□□ -1.39
LDLR-209ENST00000558528 LTN1O94822 1766 aa6.34□□□□□ -1.4
LDLR-209ENST00000558528 COL18A1P39060 1754 aa6.34□□□□□ -1.4
LDLR-209ENST00000558528 LMO7Q8WWI1 1683 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 LRRC37A3O60309 1634 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 STARD3NLO95772 234 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 RLBP1P12271 317 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 TRIM27P14373 513 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 EIF2S2P20042 333 aaKnown RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 NOS2P35228 1153 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 IRX6P78412 446 aaPredicted RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 ZNF827Q17R98 1081 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 ARSHQ5FYA8 562 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 MPNDQ8N594 471 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 EXOC6Q8TAG9 804 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 CCDC74AQ96AQ1 378 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 CDK15Q96Q40 435 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 SRPK1Q96SB4 655 aaKnown RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 CRBNQ96SW2 442 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 SPON2Q9BUD6 331 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 RWDD1Q9H446 243 aaPredicted RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 IL21Q9HBE4 155 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 PCDH12Q9NPG4 1184 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 DDX21Q9NR30 783 aaKnown RBP eCLIP6.33□□□□□ -1.4
LDLR-209ENST00000558528 KLHL42Q9P2K6 505 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 MAGEC2Q9UBF1 373 aaPredicted RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 ZNF232Q9UNY5 417 aa6.33□□□□□ -1.4
LDLR-209ENST00000558528 FNDC3AQ9Y2H6 1198 aaKnown RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 V9GY48 417 aaPredicted RBP6.33□□□□□ -1.4
LDLR-209ENST00000558528 CICQ96RK0 1608 aaPredicted RBP6.32□□□□□ -1.4
LDLR-209ENST00000558528 HEG1Q9ULI3 1381 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 USP17L7P0C7H9 530 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 EMP3P54852 163 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 INTS3Q68E01 1043 aaKnown RBP6.32□□□□□ -1.4
LDLR-209ENST00000558528 XKR5Q6UX68 686 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 TREML1Q86YW5 311 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 ITPRIPQ8IWB1 547 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 GPR152Q8TDT2 470 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 ESYT1Q9BSJ8 1104 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 RSRP1Q9BUV0 290 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 NEUROD4Q9HD90 331 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 NMRK2Q9NPI5 230 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 TYW1Q9NV66 732 aaKnown RBP6.32□□□□□ -1.4
LDLR-209ENST00000558528 PGPEP1Q9NXJ5 209 aa6.32□□□□□ -1.4
LDLR-209ENST00000558528 R3HCC1Q9Y3T6 440 aaKnown RBP6.32□□□□□ -1.4
LDLR-209ENST00000558528 POTEB2H3BUK9 544 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 STAU1O95793 577 aaKnown RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 GNAI3P08754 354 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 FSHRP23945 695 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 NEXNQ0ZGT2 675 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 FAM26DQ5JW98 314 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 MEI1Q5TIA1 1274 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 PDE12Q6L8Q7 609 aaKnown RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 NBPF10Q6P3W6 841 aaKnown RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 CENPQQ7L2Z9 268 aaPredicted RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 RPAP2Q8IXW5 612 aaPredicted RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 CCDC116Q8IYX3 515 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 PANK1Q8TE04 598 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms