RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 MAGEB6P1A0A0J9YX57 407 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 GOLIM4O00461 696 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 NFIAQ12857 509 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 SLC9C2Q5TAH2 1124 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.46□□□□□ -0.74
USP3-208ENST00000558285 MIGA2Q7L4E1 593 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 FASTKD5Q7L8L6 764 aaKnown RBP10.46□□□□□ -0.74
USP3-208ENST00000558285 IFNL1Q8IU54 200 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 CLMNQ96JQ2 1002 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 CFHR5Q9BXR6 569 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 OSBPL5Q9H0X9 879 aaPredicted RBP10.46□□□□□ -0.74
USP3-208ENST00000558285 ZFYVE28Q9HCC9 887 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 TLR7Q9NYK1 1049 aaKnown RBP10.46□□□□□ -0.74
USP3-208ENST00000558285 FAM198AQ9UFP1 575 aa10.46□□□□□ -0.74
USP3-208ENST00000558285 MAST2Q6P0Q8 1798 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 SSC5DA1L4H1 1573 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 CCL15-CCL14A0A0B4J2E2 113 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 CXCL11O14625 94 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 ZFYP08048 801 aaPredicted RBP10.45□□□□□ -0.74
USP3-208ENST00000558285 PABPC4Q13310 644 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP3-208ENST00000558285 KIF22Q14807 665 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 CCL15Q16663 113 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 SCYL3Q8IZE3 742 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 HAUS7Q99871 368 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 PIH1D3Q9NQM4 214 aaKnown RBP10.45□□□□□ -0.74
USP3-208ENST00000558285 ZNF112Q9UJU3 913 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 AOX1Q06278 1338 aa10.45□□□□□ -0.74
USP3-208ENST00000558285 FKTNO75072 461 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 GLRX3O76003 335 aaKnown RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 RHBDL3P58872 404 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 HDAC1Q13547 482 aaPredicted RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 COL13A1Q5TAT6 717 aaPredicted RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 TGFBRAP1Q8WUH2 860 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 ERO1AQ96HE7 468 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 CRBNQ96SW2 442 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 MYH2Q9UKX2 1941 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 TESPA1A2RU30 521 aaPredicted RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 ASNSP08243 561 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 SH3RF3Q8TEJ3 882 aaPredicted RBP10.44□□□□□ -0.74
USP3-208ENST00000558285 BOLA2Q9H3K6 86 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 SNCAIPQ9Y6H5 919 aa10.44□□□□□ -0.74
USP3-208ENST00000558285 AKAP11Q9UKA4 1901 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 RFX7Q2KHR2 1363 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 POTEB2H3BUK9 544 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 POLR3DP05423 398 aaPredicted RBP10.43□□□□□ -0.74
USP3-208ENST00000558285 PDE6AP16499 860 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 MAP3K10Q02779 954 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 UBE3CQ15386 1083 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 TAF1CQ15572 869 aaPredicted RBP10.43□□□□□ -0.74
USP3-208ENST00000558285 CTU1Q7Z7A3 348 aaKnown RBP10.43□□□□□ -0.74
USP3-208ENST00000558285 TICAM2Q86XR7 235 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 ZKSCAN4Q969J2 545 aaPredicted RBP10.43□□□□□ -0.74
USP3-208ENST00000558285 PARK7Q99497 189 aaKnown RBP10.43□□□□□ -0.74
USP3-208ENST00000558285 PNMA3Q9UL41 463 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 FLT1P17948 1338 aa10.43□□□□□ -0.74
USP3-208ENST00000558285 GPR25O00155 361 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 MAPKAPK5Q8IW41 473 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 MIGA1Q8NAN2 632 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 ZIC5Q96T25 663 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 EHD4Q9H223 541 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 ZNF287Q9HBT7 754 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 CABP5Q9NP86 173 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 ATP8A2Q9NTI2 1148 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 TSKSQ9UJT2 592 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 FZD1Q9UP38 647 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 ZHX2Q9Y6X8 837 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 ZNF532Q9HCE3 1301 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 AK9Q5TCS8 1911 aa10.42□□□□□ -0.74
USP3-208ENST00000558285 DDTLA6NHG4 134 aaPredicted RBP10.41□□□□□ -0.74
USP3-208ENST00000558285 GNRH1P01148 92 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 GNAT2P19087 354 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 MX1P20591 662 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 INPP5BP32019 993 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 DGKZQ13574 1117 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 ANKRD45Q5TZF3 282 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 ANKRD23Q86SG2 305 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 NACAP1Q9BZK3 213 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 TMOD4Q9NZQ9 345 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 SERPINB13Q9UIV8 391 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 KCNH4Q9UQ05 1017 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 USP17L5A8MUK1 530 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 IRF6O14896 467 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 TBC1D8O95759 1140 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 CDAN1Q8IWY9 1227 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 KBTBD3Q8NAB2 608 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 DDX4Q9NQI0 724 aaKnown RBP10.41□□□□□ -0.74
USP3-208ENST00000558285 SWAP70Q9UH65 585 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 SLC45A1Q9Y2W3 748 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 PCDHB15Q9Y5E8 787 aa10.41□□□□□ -0.74
USP3-208ENST00000558285 SMARCA5O60264 1052 aaPredicted RBP10.4□□□□□ -0.74
USP3-208ENST00000558285 SLC3A2P08195 630 aaKnown RBP10.4□□□□□ -0.74
USP3-208ENST00000558285 PTPRAP18433 802 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 HOXD10P28358 340 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 ADD2P35612 726 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 CAP2P40123 477 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 SP3Q02447 781 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 ZFPM1Q8IX07 1006 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 ZNF384Q8TF68 577 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 168.8 ms