RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RRP1BQ14684 758 aaKnown RBP15.3■□□□□ 0.04
SHMT2-227ENST00000557269 TTC6Q86TZ1 520 aa15.3■□□□□ 0.04
SHMT2-227ENST00000557269 STK11IPQ8N1F8 1099 aa15.3■□□□□ 0.04
SHMT2-227ENST00000557269 SLC44A5Q8NCS7 719 aa15.3■□□□□ 0.04
SHMT2-227ENST00000557269 NBPF3Q9H094 633 aa15.3■□□□□ 0.04
SHMT2-227ENST00000557269 INCENPQ9NQS7 918 aa15.3■□□□□ 0.04
SHMT2-227ENST00000557269 ARPP21Q9UBL0 812 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-227ENST00000557269 ZMYM6O95789 1325 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 HLA-DOAP06340 250 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 HAND2P61296 217 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 CTDSPL2Q05D32 466 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 PPARAQ07869 468 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 KIAA1211Q6ZU35 1233 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 FOXP4Q8IVH2 680 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-227ENST00000557269 EHD4Q9H223 541 aa15.29■□□□□ 0.04
SHMT2-227ENST00000557269 RBM8AQ9Y5S9 174 aaKnown RBP15.29■□□□□ 0.04
SHMT2-227ENST00000557269 PHF20L1A8MW92 1017 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 TBC1D12O60347 775 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 JAG1P78504 1218 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 SHROOM1Q2M3G4 852 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-227ENST00000557269 NKX2-3Q8TAU0 364 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHMT2-227ENST00000557269 SERPINB13Q9UIV8 391 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 ANGEL1Q9UNK9 670 aaKnown RBP15.28■□□□□ 0.04
SHMT2-227ENST00000557269 TAF6LQ9Y6J9 622 aa15.28■□□□□ 0.04
SHMT2-227ENST00000557269 UBE2Q2LH0YL09 131 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 SHMT1P34896 483 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 NF2P35240 595 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 CDK8P49336 464 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 TBC1D10CQ8IV04 446 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 CRACR2BQ8N4Y2 399 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-227ENST00000557269 KLRG1Q96E93 195 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 GBA2Q9HCG7 927 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-227ENST00000557269 ZNF112Q9UJU3 913 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 ANAPC4Q9UJX5 808 aa15.27■□□□□ 0.04
SHMT2-227ENST00000557269 U3KPZ7 1027 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-227ENST00000557269 TRPM7Q96QT4 1865 aa15.27■□□□□ 0.03
SHMT2-227ENST00000557269 LAMB1P07942 1786 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 ROBO3Q96MS0 1386 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 INPP5BP32019 993 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 TTLL12Q14166 644 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-227ENST00000557269 NECTIN1Q15223 517 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 DCAF15Q66K64 600 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 TATDN1Q6P1N9 297 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 C16orf86Q6ZW13 317 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 AMOTL1Q8IY63 956 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.26■□□□□ 0.038e-7■■□□□ 11.7
SHMT2-227ENST00000557269 ZKSCAN4Q969J2 545 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-227ENST00000557269 HOOK2Q96ED9 719 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 ZNF341Q9BYN7 854 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 CTNNA3Q9UI47 895 aa15.26■□□□□ 0.03
SHMT2-227ENST00000557269 HERC5Q9UII4 1024 aaKnown RBP15.26■□□□□ 0.03
SHMT2-227ENST00000557269 ZNF213O14771 459 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 PPP1R12BO60237 982 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-227ENST00000557269 PRDM1O75626 825 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 REC8O95072 547 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 CYP21A2P08686 494 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 MAP3K11Q16584 847 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 LDLRAD1Q5T700 205 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-227ENST00000557269 C2orf69Q8N8R5 385 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 CLMNQ96JQ2 1002 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 WRNIP1Q96S55 665 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 USP26Q9BXU7 913 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-227ENST00000557269 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.25■□□□□ 0.03
SHMT2-227ENST00000557269 PAPPA2Q9BXP8 1791 aa15.25■□□□□ 0.03
SHMT2-227ENST00000557269 TMEM88BA6NKF7 163 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 SLC27A2O14975 620 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 FGRP09769 529 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 FKBP1BP68106 108 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 MAP3K9P80192 1104 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 IMMTQ16891 758 aaKnown RBP15.24■□□□□ 0.03
SHMT2-227ENST00000557269 CREB3L3Q68CJ9 461 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 STOX1Q6ZVD7 989 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 ARMC9Q7Z3E5 817 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 TRIM34Q9BYJ4 488 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-227ENST00000557269 SWAP70Q9UH65 585 aa15.24■□□□□ 0.03
SHMT2-227ENST00000557269 NEDD4P46934 1319 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 LAMA4Q16363 1823 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 GDF11O95390 407 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 RASA1P20936 1047 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 IREB2P48200 963 aaKnown RBP15.23■□□□□ 0.03
SHMT2-227ENST00000557269 APLP1P51693 650 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 C1QTNF8P60827 252 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 HTRA3P83110 453 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 COL9A3Q14050 684 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-227ENST00000557269 VGLL4Q14135 290 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 SAPCD2Q86UD0 394 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 RASEFQ8IZ41 740 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 OTOFQ9HC10 1997 aa15.23■□□□□ 0.03
SHMT2-227ENST00000557269 CTNND1O60716 968 aaKnown RBP15.22■□□□□ 0.03
SHMT2-227ENST00000557269 AKR1B1P15121 316 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 HSPA4P34932 840 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 CAP2P40123 477 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 CERKLQ49MI3 558 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-227ENST00000557269 AKNAD1Q5T1N1 836 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 CCDC84Q86UT8 332 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-227ENST00000557269 STAG1Q8WVM7 1258 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms