RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 SCYL3Q8IZE3 742 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 LCORLQ8N3X6 602 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 APPBP2Q92624 585 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 EVI5LQ96CN4 794 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 OTUD5Q96G74 571 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 PUS7LQ9H0K6 701 aaKnown RBP12.88□□□□□ -0.35
LINC00239-201ENST00000556973 ARMT1Q9H993 441 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 ATP8A2Q9NTI2 1148 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 RNF186Q9NXI6 227 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 SAP30BPQ9UHR5 308 aaKnown RBP12.88□□□□□ -0.35
LINC00239-201ENST00000556973 TESPA1A2RU30 521 aaPredicted RBP12.87□□□□□ -0.35
LINC00239-201ENST00000556973 TRPA1O75762 1119 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 MBD4O95243 580 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 CHGBP05060 677 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 GTF2A2P52657 109 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 PPIL2Q13356 520 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 TICAM2Q86XR7 235 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 PLEKHM2Q8IWE5 1019 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 CRACR2BQ8N4Y2 399 aaPredicted RBP12.87□□□□□ -0.35
LINC00239-201ENST00000556973 CNKSR2Q8WXI2 1034 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 FSD1Q9BTV5 496 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 TRIM34Q9BYJ4 488 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 PICK1Q9NRD5 415 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 SIPA1L1O43166 1804 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 DOCK1Q14185 1865 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 NAV1Q8NEY1 1877 aa12.87□□□□□ -0.35
LINC00239-201ENST00000556973 ATAD5Q96QE3 1844 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 ALDH1A1P00352 501 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 POLR3DP05423 398 aaPredicted RBP12.86□□□□□ -0.35
LINC00239-201ENST00000556973 SLURP2P0DP57 97 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 HSPA8P11142 646 aaKnown RBP12.86□□□□□ -0.35
LINC00239-201ENST00000556973 SDR42E1Q8WUS8 393 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 DDRGK1Q96HY6 314 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 MS4A4AQ96JQ5 239 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 STRBPQ96SI9 672 aaKnown RBP12.86□□□□□ -0.35
LINC00239-201ENST00000556973 EHD4Q9H223 541 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 DCP1AQ9NPI6 582 aaPredicted RBP12.86□□□□□ -0.35
LINC00239-201ENST00000556973 PRDM10Q9NQV6 1147 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 MCM9Q9NXL9 1143 aa12.86□□□□□ -0.35
LINC00239-201ENST00000556973 FAM196BA6NMK8 535 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 IRF6O14896 467 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 PTPRAP18433 802 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 CAP2P40123 477 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 LBX1P52954 281 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 SNAPC2Q13487 334 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 IFNL1Q8IU54 200 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 OSBP2Q969R2 916 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 SERPINB13Q9UIV8 391 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 TAOK2Q9UL54 1235 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 SLC4A4Q9Y6R1 1079 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 PHIPQ8WWQ0 1821 aa12.85□□□□□ -0.35
LINC00239-201ENST00000556973 DDX60LQ5H9U9 1706 aaKnown RBP12.85□□□□□ -0.35
LINC00239-201ENST00000556973 CXCL11O14625 94 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 PRKAB2O43741 272 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 CENPBP07199 599 aaPredicted RBP12.84□□□□□ -0.35
LINC00239-201ENST00000556973 CETPP11597 493 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 GNAT2P19087 354 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 PLCD1P51178 756 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 TATDN1Q6P1N9 297 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 AMOTL1Q8IY63 956 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 PTPN18Q99952 460 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 CFHR5Q9BXR6 569 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 TBC1D2Q9BYX2 928 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 GINM1Q9NU53 330 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 KCNH4Q9UQ05 1017 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 AFG3L2Q9Y4W6 797 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 ZHX2Q9Y6X8 837 aa12.84□□□□□ -0.35
LINC00239-201ENST00000556973 BAZ2AQ9UIF9 1905 aaKnown RBP12.84□□□□□ -0.35
LINC00239-201ENST00000556973 CCL15-CCL14A0A0B4J2E2 113 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 TRIM6-TRIM34B2RNG4 842 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 PATL2C9JE40 543 aaKnown RBP12.83□□□□□ -0.36
LINC00239-201ENST00000556973 IGF2BP3O00425 579 aaKnown RBP eCLIP12.83□□□□□ -0.36
LINC00239-201ENST00000556973 ASNSP08243 561 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 CCL15Q16663 113 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 SLC4A8Q2Y0W8 1093 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 ZMYM1Q5SVZ6 1142 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 GIMAP6Q6P9H5 292 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 RILPL2Q969X0 211 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 DNAJC18Q9H819 358 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 TSKSQ9UJT2 592 aa12.83□□□□□ -0.36
LINC00239-201ENST00000556973 USP17L5A8MUK1 530 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 GSG1L2A8MUP6 293 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 USP17L12C9JPN9 530 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 USP17L21D6R901 530 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 GPAA1O43292 621 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 TBC1D8O95759 1140 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 GABPAQ06546 454 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 RRP1BQ14684 758 aaKnown RBP12.82□□□□□ -0.36
LINC00239-201ENST00000556973 C12orf60Q5U649 245 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 BRI3BPQ8WY22 251 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 AS3MTQ9HBK9 375 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 ZCCHC17Q9NP64 241 aaKnown RBP12.82□□□□□ -0.36
LINC00239-201ENST00000556973 HELLSQ9NRZ9 838 aa12.82□□□□□ -0.36
LINC00239-201ENST00000556973 M0R2C6 588 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 NEFLP07196 543 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 PDE4AP27815 886 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 CERKLQ49MI3 558 aaPredicted RBP12.81□□□□□ -0.36
LINC00239-201ENST00000556973 SBK1Q52WX2 424 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 NOM1Q5C9Z4 860 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms