RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 ASB11Q8WXH4 323 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 KCNB2Q92953 911 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 ISL2Q96A47 359 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 PPP1R16BQ96T49 567 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 EMILIN2Q9BXX0 1053 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 AKAP2Q9Y2D5 859 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 ITIH2P19823 946 aa9.52□□□□□ -0.89
VRK1-203ENST00000555067 FMR1Q06787 632 aaKnown RBP eCLIP9.52□□□□□ -0.89
VRK1-203ENST00000555067 LIN37Q96GY3 246 aaPredicted RBP9.52□□□□□ -0.89
VRK1-203ENST00000555067 IVNS1ABPQ9Y6Y0 642 aa9.52□□□□□ -0.89
VRK1-203ENST00000555067 IGF2BP3O00425 579 aaKnown RBP eCLIP9.51□□□□□ -0.89
VRK1-203ENST00000555067 NME2P22392 152 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 GSTT1P30711 240 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 LILRA6Q6PI73 481 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 SPACA3Q8IXA5 215 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 C3orf58Q8NDZ4 430 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 ASB16Q96NS5 453 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 PPM1HQ9ULR3 514 aa9.51□□□□□ -0.89
VRK1-203ENST00000555067 ARNTP27540 789 aa9.5□□□□□ -0.89
VRK1-203ENST00000555067 MAPK8P45983 427 aa9.5□□□□□ -0.89
VRK1-203ENST00000555067 ZP2Q05996 745 aa9.5□□□□□ -0.89
VRK1-203ENST00000555067 FYB2Q5VWT5 728 aa9.5□□□□□ -0.89
VRK1-203ENST00000555067 LRRC56Q8IYG6 542 aaPredicted RBP9.5□□□□□ -0.89
VRK1-203ENST00000555067 ZSCAN18Q8TBC5 510 aaPredicted RBP9.5□□□□□ -0.89
VRK1-203ENST00000555067 NCANO14594 1321 aa9.5□□□□□ -0.89
VRK1-203ENST00000555067 GIPC1O14908 333 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 KRT1P04264 644 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 ALG1LQ6GMV1 187 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 RNF214Q8ND24 703 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 NECAB3Q96P71 396 aaPredicted RBP9.49□□□□□ -0.89
VRK1-203ENST00000555067 CEP44Q9C0F1 390 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 SAMM50Q9Y512 469 aa9.49□□□□□ -0.89
VRK1-203ENST00000555067 AFMP43652 599 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 ERVK-24P63145 666 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 ATP2B2Q01814 1243 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 IKZF1Q13422 519 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 NKPD1Q17RQ9 610 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 ZC3H12AQ5D1E8 599 aaKnown RBP9.48□□□□□ -0.89
VRK1-203ENST00000555067 STK35Q8TDR2 534 aa9.48□□□□□ -0.89
VRK1-203ENST00000555067 PRRG2O14669 202 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 GLI1P08151 1106 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 ZNF252P-AS1Q0IIN9 211 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 MAP1SQ66K74 1059 aaPredicted RBP9.47□□□□□ -0.89
VRK1-203ENST00000555067 SYDE1Q6ZW31 735 aaPredicted RBP9.47□□□□□ -0.89
VRK1-203ENST00000555067 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.47□□□□□ -0.89
VRK1-203ENST00000555067 ANKRD24Q8TF21 1146 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 KRTAP9-3Q9BYQ3 159 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 GTF2IRD1Q9UHL9 959 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 RAPGEFL1Q9UHV5 662 aa9.47□□□□□ -0.89
VRK1-203ENST00000555067 PATL2C9JE40 543 aaKnown RBP9.46□□□□□ -0.9
VRK1-203ENST00000555067 PRR23BQ6ZRT6 265 aa9.46□□□□□ -0.9
VRK1-203ENST00000555067 ANKLE2Q86XL3 938 aa9.46□□□□□ -0.9
VRK1-203ENST00000555067 ACSBG1Q96GR2 724 aa9.46□□□□□ -0.9
VRK1-203ENST00000555067 CBX8Q9HC52 389 aa9.46□□□□□ -0.9
VRK1-203ENST00000555067 PITPNM2Q9BZ72 1349 aa9.46□□□□□ -0.9
VRK1-203ENST00000555067 ZSCAN22P10073 491 aaPredicted RBP9.45□□□□□ -0.9
VRK1-203ENST00000555067 TPTE2Q6XPS3 522 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 TTLL10Q6ZVT0 673 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 GPBAR1Q8TDU6 330 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 CACNA2D2Q9NY47 1150 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 LMCD1Q9NZU5 365 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 SPG7Q9UQ90 795 aa9.45□□□□□ -0.9
VRK1-203ENST00000555067 ENC1O14682 589 aa9.44□□□□□ -0.9
VRK1-203ENST00000555067 CLCN7P51798 805 aa9.44□□□□□ -0.9
VRK1-203ENST00000555067 OSBPL7Q9BZF2 842 aa9.44□□□□□ -0.9
VRK1-203ENST00000555067 SSU72Q9NP77 194 aaKnown RBP9.44□□□□□ -0.9
VRK1-203ENST00000555067 PRDM10Q9NQV6 1147 aa9.44□□□□□ -0.9
VRK1-203ENST00000555067 TRIM37O94972 964 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 C1QTNF9P0C862 333 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 NTF4P34130 210 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 SCARA3Q6AZY7 606 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 KIRREL1Q96J84 757 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 C19orf73Q9NVV2 129 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 FAM8A1Q9UBU6 413 aa9.43□□□□□ -0.9
VRK1-203ENST00000555067 B8ZZF3 427 aa9.42□□□□□ -0.9
VRK1-203ENST00000555067 LRRC14Q15048 493 aa9.42□□□□□ -0.9
VRK1-203ENST00000555067 AMIGO3Q86WK7 504 aa9.42□□□□□ -0.9
VRK1-203ENST00000555067 TRAIPQ9BWF2 469 aa9.42□□□□□ -0.9
VRK1-203ENST00000555067 C12orf49Q9H741 205 aa9.42□□□□□ -0.9
VRK1-203ENST00000555067 BMP6P22004 513 aa9.41□□□□□ -0.9
VRK1-203ENST00000555067 LLGL2Q6P1M3 1020 aa9.41□□□□□ -0.9
VRK1-203ENST00000555067 CYFIP1Q7L576 1253 aa9.41□□□□□ -0.9
VRK1-203ENST00000555067 SETDB2Q96T68 719 aa9.41□□□□□ -0.9
VRK1-203ENST00000555067 WWC3Q9ULE0 1092 aa9.41□□□□□ -0.9
VRK1-203ENST00000555067 FBXO24O75426 580 aa9.4□□□□□ -0.9
VRK1-203ENST00000555067 EOMESO95936 686 aa9.4□□□□□ -0.9
VRK1-203ENST00000555067 FRMD6Q96NE9 622 aa9.4□□□□□ -0.9
VRK1-203ENST00000555067 PAGE1O75459 146 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 RING1Q06587 406 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 TMEM67Q5HYA8 995 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 MPZL3Q6UWV2 235 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 UBE3DQ7Z6J8 389 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 FBXO15Q8NCQ5 510 aaPredicted RBP9.39□□□□□ -0.91
VRK1-203ENST00000555067 GRIN3AQ8TCU5 1115 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 CYP8B1Q9UNU6 501 aa9.39□□□□□ -0.91
VRK1-203ENST00000555067 P4HBP07237 508 aaKnown RBP9.38□□□□□ -0.91
VRK1-203ENST00000555067 USP17L7P0C7H9 530 aa9.38□□□□□ -0.91
VRK1-203ENST00000555067 PICK1Q9NRD5 415 aa9.38□□□□□ -0.91
VRK1-203ENST00000555067 SEMA3GQ9NS98 782 aa9.38□□□□□ -0.91
VRK1-203ENST00000555067 NFIBO00712 420 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms