RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 NOL10Q9BSC4 688 aaKnown RBP20.51■□□□□ 0.87
SHOX-204ENST00000554971 PANK2Q9BZ23 570 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 MKRN1Q9UHC7 482 aaKnown RBP20.51■□□□□ 0.87
SHOX-204ENST00000554971 PASKQ96RG2 1323 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 WDR33Q9C0J8 1336 aaKnown RBP20.51■□□□□ 0.87
SHOX-204ENST00000554971 FOXP2O15409 715 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 PLCG2P16885 1265 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 SH3BP5LQ7L8J4 393 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 FAM83AQ86UY5 434 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 SDR42E1Q8WUS8 393 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 AIDAQ96BJ3 306 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 TMOD2Q9NZR1 351 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 LIMCH1Q9UPQ0 1083 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 FLT1P17948 1338 aa20.5■□□□□ 0.87
SHOX-204ENST00000554971 CWC27Q6UX04 472 aaKnown RBP20.5■□□□□ 0.87
SHOX-204ENST00000554971 ANP32BQ92688 251 aaKnown RBP20.5■□□□□ 0.87
SHOX-204ENST00000554971 PRPF40AO75400 957 aaKnown RBP20.49■□□□□ 0.87
SHOX-204ENST00000554971 TNFAIP1Q13829 316 aa20.49■□□□□ 0.87
SHOX-204ENST00000554971 MAPKAPK5Q8IW41 473 aa20.49■□□□□ 0.87
SHOX-204ENST00000554971 ZSCAN31Q96LW9 406 aaPredicted RBP20.49■□□□□ 0.87
SHOX-204ENST00000554971 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.49■□□□□ 0.87
SHOX-204ENST00000554971 NPM3O75607 178 aaKnown RBP20.49■□□□□ 0.87
SHOX-204ENST00000554971 CERS3Q8IU89 383 aa20.49■□□□□ 0.87
SHOX-204ENST00000554971 FAM151AQ8WW52 585 aa20.49■□□□□ 0.87
SHOX-204ENST00000554971 UPF3BQ9BZI7 483 aaKnown RBP20.49■□□□□ 0.87
SHOX-204ENST00000554971 HELLSQ9NRZ9 838 aa20.49■□□□□ 0.87
SHOX-204ENST00000554971 DDTLA6NHG4 134 aaPredicted RBP20.48■□□□□ 0.87
SHOX-204ENST00000554971 NBPF12Q5TAG4 269 aaPredicted RBP20.48■□□□□ 0.87
SHOX-204ENST00000554971 CDCA5Q96FF9 252 aa20.48■□□□□ 0.87
SHOX-204ENST00000554971 OSBPL5Q9H0X9 879 aaPredicted RBP20.48■□□□□ 0.87
SHOX-204ENST00000554971 ENTPD3O75355 529 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 CCDC173Q0VFZ6 552 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 FSTL1Q12841 308 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 MCMDC2Q4G0Z9 681 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 VPS53Q5VIR6 699 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 CRNKL1Q9BZJ0 848 aaKnown RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 DCP1AQ9NPI6 582 aaPredicted RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 ATRNL1Q5VV63 1379 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 RPAP1Q9BWH6 1393 aaPredicted RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 GSG1L2A8MUP6 293 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 SLURP2P0DP57 97 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 ZKSCAN1P17029 563 aaPredicted RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 EVX2Q03828 476 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 ZSCAN23Q3MJ62 389 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 EPB41L4AQ9HCS5 686 aaPredicted RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 SH2B1Q9NRF2 756 aaPredicted RBP20.47■□□□□ 0.87
SHOX-204ENST00000554971 PPP2R3BQ9Y5P8 575 aa20.47■□□□□ 0.87
SHOX-204ENST00000554971 TNNI2P48788 182 aa20.46■□□□□ 0.87
SHOX-204ENST00000554971 CST9Q5W186 159 aa20.46■□□□□ 0.87
SHOX-204ENST00000554971 PPP1R9BQ96SB3 815 aa20.46■□□□□ 0.87
SHOX-204ENST00000554971 FZD1Q9UP38 647 aa20.46■□□□□ 0.87
SHOX-204ENST00000554971 SLC4A4Q9Y6R1 1079 aa20.46■□□□□ 0.87
SHOX-204ENST00000554971 COL2A1P02458 1487 aaPredicted RBP20.46■□□□□ 0.87
SHOX-204ENST00000554971 CAVIN1Q6NZI2 390 aaKnown RBP20.45■□□□□ 0.86
SHOX-204ENST00000554971 ZSWIM6Q9HCJ5 1215 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 PAPPA2Q9BXP8 1791 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 OTOFQ9HC10 1997 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 SMIM22K7EJ46 135 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 USP5P45974 858 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 NASPP49321 788 aaPredicted RBP20.45■□□□□ 0.86
SHOX-204ENST00000554971 NECTIN1Q15223 517 aa20.45■□□□□ 0.86
SHOX-204ENST00000554971 SYAP1Q96A49 352 aaPredicted RBP20.45■□□□□ 0.86
SHOX-204ENST00000554971 NCLP19338 710 aaKnown RBP20.44■□□□□ 0.86
SHOX-204ENST00000554971 PSMA5P28066 241 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 SLC4A8Q2Y0W8 1093 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 RASEFQ8IZ41 740 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 MAP4K1Q92918 833 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 SAP30BPQ9UHR5 308 aaKnown RBP20.44■□□□□ 0.86
SHOX-204ENST00000554971 ATP6V1DQ9Y5K8 247 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 CYP46A1Q9Y6A2 500 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 CCDC171Q6TFL3 1326 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 LAMB1P07942 1786 aa20.44■□□□□ 0.86
SHOX-204ENST00000554971 AK2P54819 239 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 GPT2Q8TD30 523 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 TRIM44Q96DX7 344 aaPredicted RBP20.43■□□□□ 0.86
SHOX-204ENST00000554971 CSRNP1Q96S65 589 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 ALDH8A1Q9H2A2 487 aaPredicted RBP20.43■□□□□ 0.86
SHOX-204ENST00000554971 ATP8A2Q9NTI2 1148 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 CLCN1P35523 988 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 RNF20Q5VTR2 975 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 TMEM87AQ8NBN3 555 aa20.43■□□□□ 0.86
SHOX-204ENST00000554971 CELF2O95319 508 aaKnown RBP20.42■□□□□ 0.86
SHOX-204ENST00000554971 ZNF408Q9H9D4 720 aa20.42■□□□□ 0.86
SHOX-204ENST00000554971 PATL2C9JE40 543 aaKnown RBP20.41■□□□□ 0.86
SHOX-204ENST00000554971 HSPD1P10809 573 aaKnown RBP20.41■□□□□ 0.86
SHOX-204ENST00000554971 GNAT2P19087 354 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 PLCD1P51178 756 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 ZSCAN29Q8IWY8 852 aaPredicted RBP20.41■□□□□ 0.86
SHOX-204ENST00000554971 PDRG1Q9NUG6 133 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 MCM9Q9NXL9 1143 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 CYP2D7A0A087X1C5 515 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 CYP2D6P10635 497 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 CASTP20810 708 aaKnown RBP20.41■□□□□ 0.86
SHOX-204ENST00000554971 TSGA10IPQ3SY00 556 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 MOB2Q70IA6 237 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 RUFY3Q7L099 469 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 IFNL3Q8IZI9 196 aa20.41■□□□□ 0.86
SHOX-204ENST00000554971 MYH8P13535 1937 aa20.4■□□□□ 0.86
SHOX-204ENST00000554971 PTH1RQ03431 593 aa20.4■□□□□ 0.86
SHOX-204ENST00000554971 ANKRD1Q15327 319 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms