RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TREML2Q5T2D2 321 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 GORABQ5T7V8 394 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 ZKSCAN2Q63HK3 967 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 FASTKD5Q7L8L6 764 aaKnown RBP13□□□□□ -0.33
SHMT2-215ENST00000554656 ADGRA1Q86SQ6 560 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 SH3RF3Q8TEJ3 882 aaPredicted RBP13□□□□□ -0.33
SHMT2-215ENST00000554656 RAI14Q9P0K7 980 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 SLC45A1Q9Y2W3 748 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 FPGT-TNNI3KV9GXZ4 949 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 MYH1P12882 1939 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 ALPK3Q96L96 1907 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 TRIOBPQ9H2D6 2365 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 UQCRFS1P1P0C7P4 283 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 FCGRTP55899 365 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 GSTO1P78417 241 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 UBE2Q1Q7Z7E8 422 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 TEX11Q8IYF3 940 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 RAET1EQ8TD07 263 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 DNAJC18Q9H819 358 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.99□□□□□ -0.33
SHMT2-215ENST00000554656 GPR108Q9NPR9 543 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 TLR7Q9NYK1 1049 aaKnown RBP12.99□□□□□ -0.33
SHMT2-215ENST00000554656 AGTPBP1Q9UPW5 1226 aa12.99□□□□□ -0.33
SHMT2-215ENST00000554656 DDX60LQ5H9U9 1706 aaKnown RBP12.99□□□□□ -0.33
SHMT2-215ENST00000554656 MAP4K4O95819 1239 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-215ENST00000554656 CYP2E1P05181 493 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-215ENST00000554656 LDHCP07864 332 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 CCL5P13501 91 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 HOXD10P28358 340 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 JAG1P78504 1218 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 ATP8B2P98198 1209 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 SHROOM1Q2M3G4 852 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-215ENST00000554656 GCC1Q96CN9 775 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 PIH1D3Q9NQM4 214 aaKnown RBP12.98□□□□□ -0.33
SHMT2-215ENST00000554656 PCDH10Q9P2E7 1040 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 LRP2BPQ9P2M1 347 aa12.98□□□□□ -0.33
SHMT2-215ENST00000554656 ELNP15502 786 aa12.97□□□□□ -0.33
SHMT2-215ENST00000554656 CAP2P40123 477 aa12.97□□□□□ -0.33
SHMT2-215ENST00000554656 SPP2Q13103 211 aa12.97□□□□□ -0.33
SHMT2-215ENST00000554656 TTC39AQ5SRH9 613 aa12.97□□□□□ -0.33
SHMT2-215ENST00000554656 UNC93B1Q9H1C4 597 aa12.97□□□□□ -0.33
SHMT2-215ENST00000554656 AATFQ9NY61 560 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-215ENST00000554656 DBNLQ9UJU6 430 aaKnown RBP12.97□□□□□ -0.33
SHMT2-215ENST00000554656 FLT1P17948 1338 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 H0YGN5 161 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 ZBTB7BO15156 539 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-215ENST00000554656 GJB1P08034 283 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 ZAP70P43403 619 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 GJA8P48165 433 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 FLT3LGP49771 235 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 HMGCS2P54868 508 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 NAA16Q6N069 864 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-215ENST00000554656 ANKRD13CQ8N6S4 541 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 PROCA1Q8NCQ7 364 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-215ENST00000554656 SLAIN1Q8ND83 568 aa12.96□□□□□ -0.33
SHMT2-215ENST00000554656 NOP58Q9Y2X3 529 aaKnown RBP12.96□□□□□ -0.33
SHMT2-215ENST00000554656 RANBP2P49792 3224 aaKnown RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 ADCY3O60266 1144 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 SURF6O75683 361 aaKnown RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 PPP4CP60510 307 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 OS9Q13438 667 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 METTL16Q86W50 562 aaKnown RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 MAPKAPK5Q8IW41 473 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 ITPRIPQ8IWB1 547 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 ZNF280CQ8ND82 737 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 SMCR8Q8TEV9 937 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 TGFBRAP1Q8WUH2 860 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 EAF2Q96CJ1 260 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 ZNF512BQ96KM6 892 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 RNF208Q9H0X6 261 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 PPP4R2Q9NY27 417 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 HERC5Q9UII4 1024 aaKnown RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 COLQQ9Y215 455 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-215ENST00000554656 NAV1Q8NEY1 1877 aa12.95□□□□□ -0.34
SHMT2-215ENST00000554656 USP17L5A8MUK1 530 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 TNPO2O14787 897 aaKnown RBP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 INHAP05111 366 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 FXR1P51114 621 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 IRF5Q13568 498 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 FAM110CQ1W6H9 321 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 SH3D19Q5HYK7 790 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 CCDC8Q9H0W5 538 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 ASCC2Q9H1I8 757 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 PI4KBQ9UBF8 816 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 BIN2Q9UBW5 565 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-215ENST00000554656 NDUFB9Q9Y6M9 179 aa12.94□□□□□ -0.34
SHMT2-215ENST00000554656 PEX10O60683 326 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 PLCG2P16885 1265 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 UBXN2AP68543 259 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 MTMR2Q13614 643 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 CCDC158Q5M9N0 1113 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 CEP85Q6P2H3 762 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 FTSJ3Q8IY81 847 aaKnown RBP12.93□□□□□ -0.34
SHMT2-215ENST00000554656 U2AF1L4Q8WU68 220 aaKnown RBP12.93□□□□□ -0.34
SHMT2-215ENST00000554656 WDR18Q9BV38 432 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 SAP30BPQ9UHR5 308 aaKnown RBP12.93□□□□□ -0.34
SHMT2-215ENST00000554656 PNMA3Q9UL41 463 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 PALD1Q9ULE6 856 aa12.93□□□□□ -0.34
SHMT2-215ENST00000554656 GDF11O95390 407 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms