RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 B4GALNT3Q6L9W6 998 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 SCYL3Q8IZE3 742 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 PI4K2BQ8TCG2 481 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 ZNF296Q8WUU4 475 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 ZHX2Q9Y6X8 837 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 COL2A1P02458 1487 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 FOCADQ5VW36 1801 aa14.02□□□□□ -0.16
CCDC88C-208ENST00000554165 SALL3Q9BXA9 1300 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 BTBD19C9JJ37 291 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 SMIM22K7EJ46 135 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 GPR25O00155 361 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 TBC1D12O60347 775 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 CTNND1O60716 968 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 CAPN15O75808 1086 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 MBD4O95243 580 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 CYP2D6P10635 497 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 PPATQ06203 517 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 CRHR2Q13324 411 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 SNAPC2Q13487 334 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 MOGSQ13724 837 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 SDR42E1Q8WUS8 393 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 GPATCH3Q96I76 525 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 PICK1Q9NRD5 415 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 PI4KBQ9UBF8 816 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 KCNH4Q9UQ05 1017 aa14.02□□□□□ -0.17
CCDC88C-208ENST00000554165 CETPP11597 493 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 MX1P20591 662 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 PLCD1P51178 756 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 CAP1Q01518 475 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 GCC1Q96CN9 775 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 LNPKQ9C0E8 428 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 PUS7LQ9H0K6 701 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 DHX36Q9H2U1 1008 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 RWDD1Q9H446 243 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 LAMB1P07942 1786 aa14.01□□□□□ -0.17
CCDC88C-208ENST00000554165 MYH1P12882 1939 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 GDF11O95390 407 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 ALDH1A1P00352 501 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 CAP2P40123 477 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 DGKZQ13574 1117 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 AAMPQ13685 434 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 IFFO2Q5TF58 517 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 METTL16Q86W50 562 aaKnown RBP14□□□□□ -0.17
CCDC88C-208ENST00000554165 SMC5Q8IY18 1101 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 CRACR2BQ8N4Y2 399 aaPredicted RBP14□□□□□ -0.17
CCDC88C-208ENST00000554165 KBTBD3Q8NAB2 608 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 CFHR5Q9BXR6 569 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 CRNKL1Q9BZJ0 848 aaKnown RBP14□□□□□ -0.17
CCDC88C-208ENST00000554165 DDX24Q9GZR7 859 aaKnown RBP eCLIP14□□□□□ -0.17
CCDC88C-208ENST00000554165 MCOLN1Q9GZU1 580 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 AFG3L2Q9Y4W6 797 aa14□□□□□ -0.17
CCDC88C-208ENST00000554165 TTC41PQ6P2S7 1318 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 CYP2D7A0A087X1C5 515 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 TRIM75PA6NK02 468 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 UBE3CQ15386 1083 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 TAF1CQ15572 869 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 TMED8Q6PL24 325 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 FOXP4Q8IVH2 680 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 OSBP2Q969R2 916 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 DCP1AQ9NPI6 582 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 MCM9Q9NXL9 1143 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 HERC5Q9UII4 1024 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 DOCK1Q14185 1865 aa13.99□□□□□ -0.17
CCDC88C-208ENST00000554165 MYH7P12883 1935 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 CXCL11O14625 94 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 GLRX3O76003 335 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 HLA-DOAP06340 250 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 PDE1AP54750 535 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 OTUD7BQ6GQQ9 843 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 GPAT2Q6NUI2 795 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 CERS3Q8IU89 383 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 SLC44A5Q8NCS7 719 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 ZBTB47Q9UFB7 747 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 STAP2Q9UGK3 403 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 PHIPQ8WWQ0 1821 aa13.98□□□□□ -0.17
CCDC88C-208ENST00000554165 A0A0G2JLL6 359 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 M0R2C6 588 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 PDHXO00330 501 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 ERC2O15083 957 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 RNF113AO15541 343 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 FKTNO75072 461 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 ECM2O94769 699 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 POLR3DP05423 398 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 SPP2Q13103 211 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 GADL1Q6ZQY3 521 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 PRRT2Q7Z6L0 340 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 DYNLL2Q96FJ2 89 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 ABHD8Q96I13 439 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 STRBPQ96SI9 672 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 SEC62Q99442 399 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 TRIM34Q9BYJ4 488 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 SLC4A4Q9Y6R1 1079 aa13.97□□□□□ -0.17
CCDC88C-208ENST00000554165 DDX60LQ5H9U9 1706 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 BAZ2AQ9UIF9 1905 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 GH2P01242 217 aa13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 SHMT1P34896 483 aa13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 NUCB1Q02818 461 aa13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 ZSCAN25Q6NSZ9 544 aa13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 ANKRD23Q86SG2 305 aa13.96□□□□□ -0.17
CCDC88C-208ENST00000554165 TTC6Q86TZ1 520 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms