RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 IGF2BP3O00425 579 aaKnown RBP eCLIP9.39□□□□□ -0.91
ATXN3-219ENST00000553488 IGKV5-2P06315 115 aa9.39□□□□□ -0.91
ATXN3-219ENST00000553488 MMP14P50281 582 aa9.39□□□□□ -0.91
ATXN3-219ENST00000553488 OTOP1Q7RTM1 612 aa9.39□□□□□ -0.91
ATXN3-219ENST00000553488 ARMC9Q7Z3E5 817 aa9.39□□□□□ -0.91
ATXN3-219ENST00000553488 APOBEC3FQ8IUX4 373 aaKnown RBP9.39□□□□□ -0.91
ATXN3-219ENST00000553488 PCMTD1Q96MG8 357 aaPredicted RBP9.39□□□□□ -0.91
ATXN3-219ENST00000553488 CDC5LQ99459 802 aaKnown RBP9.39□□□□□ -0.91
ATXN3-219ENST00000553488 COA1Q9GZY4 146 aa9.39□□□□□ -0.91
ATXN3-219ENST00000553488 ALDH1A1P00352 501 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 ZBTB48P10074 688 aaPredicted RBP9.38□□□□□ -0.91
ATXN3-219ENST00000553488 VARSP26640 1264 aaKnown RBP9.38□□□□□ -0.91
ATXN3-219ENST00000553488 CAP1Q01518 475 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 PRKG1Q13976 671 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 SH3RF1Q7Z6J0 888 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 OGFOD1Q8N543 542 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 EHBP1Q8NDI1 1231 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 WNK4Q96J92 1243 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 IFT57Q9NWB7 429 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 ANGEL1Q9UNK9 670 aaKnown RBP9.38□□□□□ -0.91
ATXN3-219ENST00000553488 TRIM17Q9Y577 477 aa9.38□□□□□ -0.91
ATXN3-219ENST00000553488 AOX1Q06278 1338 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 TTC24A2A3L6 582 aaPredicted RBP9.37□□□□□ -0.91
ATXN3-219ENST00000553488 MANSC4A6NHS7 340 aaPredicted RBP9.37□□□□□ -0.91
ATXN3-219ENST00000553488 SMCPP49901 116 aaPredicted RBP9.37□□□□□ -0.91
ATXN3-219ENST00000553488 C4orf48Q5BLP8 95 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 INTS3Q68E01 1043 aaKnown RBP9.37□□□□□ -0.91
ATXN3-219ENST00000553488 KIAA0825Q8IV33 1275 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 CERS5Q8N5B7 392 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 C8orf58Q8NAV2 365 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 FOXJ1Q92949 421 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 ARMC5Q96C12 935 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 CLMNQ96JQ2 1002 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 AAASQ9NRG9 546 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 ADAMTS8Q9UP79 889 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 MAP3K2Q9Y2U5 619 aa9.37□□□□□ -0.91
ATXN3-219ENST00000553488 ZNF804BA4D1E1 1349 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 ELL2O00472 640 aaPredicted RBP9.36□□□□□ -0.91
ATXN3-219ENST00000553488 FXR1P51114 621 aaKnown RBP eCLIP9.36□□□□□ -0.91
ATXN3-219ENST00000553488 TTLL5Q6EMB2 1281 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 MTMR14Q8NCE2 650 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 ARMC2Q8NEN0 867 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 DEFB129Q9H1M3 183 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 PTPN22Q9Y2R2 807 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 LEMD3Q9Y2U8 911 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 PCDHAC2Q9Y5I4 1007 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 PPP2R3BQ9Y5P8 575 aa9.36□□□□□ -0.91
ATXN3-219ENST00000553488 PI4KAP2A4QPH2 592 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 UNCXA6NJT0 531 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 NEURL1BA8MQ27 555 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 AP1G2O75843 785 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 DDX58O95786 925 aaKnown RBP9.35□□□□□ -0.91
ATXN3-219ENST00000553488 CASP7P55210 303 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 INHBEP58166 350 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 GNAI1P63096 354 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 GTF2IP78347 998 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 CRHR2Q13324 411 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 WDR43Q15061 677 aaKnown RBP eCLIP9.35□□□□□ -0.91
ATXN3-219ENST00000553488 CWF19L2Q2TBE0 894 aaKnown RBP9.35□□□□□ -0.91
ATXN3-219ENST00000553488 KSR2Q6VAB6 950 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 SH3BP5LQ7L8J4 393 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 PI4KAP1Q8N8J0 262 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 CD99L2Q8TCZ2 262 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 ERO1AQ96HE7 468 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 PLA2G12BQ9BX93 195 aa9.35□□□□□ -0.91
ATXN3-219ENST00000553488 HMX1Q9NP08 348 aaPredicted RBP9.35□□□□□ -0.91
ATXN3-219ENST00000553488 CUL9Q8IWT3 2517 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 H7C1W4 665 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 IGHMBP2P38935 993 aaKnown RBP9.34□□□□□ -0.91
ATXN3-219ENST00000553488 CTC1Q2NKJ3 1217 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 CCDC30Q5VVM6 783 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 C15orf52Q6ZUT6 534 aaKnown RBP9.34□□□□□ -0.91
ATXN3-219ENST00000553488 UBE3BQ7Z3V4 1068 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 TSPYL6Q8N831 410 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 GPKOWQ92917 476 aaPredicted RBP eCLIP9.34□□□□□ -0.91
ATXN3-219ENST00000553488 PTPN18Q99952 460 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 C1QTNF2Q9BXJ5 285 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 CD209Q9NNX6 404 aa9.34□□□□□ -0.91
ATXN3-219ENST00000553488 SNAP23O00161 211 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 CSF1RP07333 972 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 EN2P19622 333 aaPredicted RBP9.33□□□□□ -0.92
ATXN3-219ENST00000553488 ITGA6P23229 1130 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 CHRNDQ07001 517 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 DLGAP5Q15398 846 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 NR6A1Q15406 480 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 TMEM259Q4ZIN3 620 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 HPS1Q92902 700 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 SLC10A4Q96EP9 437 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 ZNF333Q96JL9 665 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 CDK15Q96Q40 435 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 ANKRD2Q9GZV1 360 aa9.33□□□□□ -0.92
ATXN3-219ENST00000553488 CLRN2A0PK11 232 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 APAF1O14727 1248 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 ST8SIA5O15466 376 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 PPP1R12BO60237 982 aaPredicted RBP9.32□□□□□ -0.92
ATXN3-219ENST00000553488 USP2O75604 605 aaPredicted RBP9.32□□□□□ -0.92
ATXN3-219ENST00000553488 IL1R1P14778 569 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 FKBP1AP62942 108 aaKnown RBP9.32□□□□□ -0.92
ATXN3-219ENST00000553488 GCKRQ14397 625 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 CFAP100Q494V2 611 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms